PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
4551-4600 / 86044 show all
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.7273
20300
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.0707
96.2145
100.0000
78.9928
9153687600
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.7273
20300
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6920
97.4178
100.0000
77.5262
8302279400
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.1111
30400
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3832
98.7739
100.0000
75.8608
386748388400
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
92.8571
10100
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.3592
98.7265
100.0000
55.4162
341144341200
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
0.0000
00100
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
91.2000
1051100
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8849
99.7700
100.0000
52.7633
607414607700
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
70.5882
50500
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_51to200*
94.1176
88.8889
100.0000
94.9640
81700
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.0820
70600
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
94.1176
11100
ltrigg-rtg2SNP*map_l100_m0_e0hetalt
93.3333
87.5000
100.0000
64.1026
1421400
ltrigg-rtg2SNP*map_l100_m1_e0hetalt
96.2025
92.6829
100.0000
63.4615
3833800
ltrigg-rtg2SNP*map_l100_m2_e0hetalt
96.2963
92.8571
100.0000
66.0870
3933900
ltrigg-rtg2SNP*map_l100_m2_e1hetalt
96.3855
93.0233
100.0000
65.5172
4034000
ltrigg-rtg2SNP*map_l125_m0_e0hetalt
87.5000
77.7778
100.0000
74.0741
72700
ltrigg-rtg2SNP*map_l125_m1_e0hetalt
96.5517
93.3333
100.0000
61.1111
2822800
ltrigg-rtg2SNP*map_l125_m2_e0hetalt
96.5517
93.3333
100.0000
67.4419
2822800
ltrigg-rtg2SNP*map_l125_m2_e1hetalt
96.5517
93.3333
100.0000
67.4419
2822800
ltrigg-rtg2SNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
30300
ltrigg-rtg2SNP*map_l150_m1_e0hetalt
94.7368
90.0000
100.0000
67.2727
1821800
ltrigg-rtg2SNP*map_l150_m2_e0hetalt
94.7368
90.0000
100.0000
71.4286
1821800
ltrigg-rtg2SNP*map_l150_m2_e1hetalt
94.7368
90.0000
100.0000
71.4286
1821800
ltrigg-rtg2SNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
ltrigg-rtg2SNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.8889
22200
ltrigg-rtg2SNP*map_l250_m2_e0hetalt
75.0000
60.0000
100.0000
86.9565
32300
ltrigg-rtg2SNP*map_l250_m2_e1hetalt
75.0000
60.0000
100.0000
86.9565
32300
ltrigg-rtg2SNP*segduphetalt
100.0000
100.0000
100.0000
96.8037
70700
ltrigg-rtg2SNP*segdupwithalt*
0.0000
100.0000
00000
ltrigg-rtg2SNP*segdupwithalthet
0.0000
100.0000
00000
ltrigg-rtg2SNP*segdupwithalthetalt
0.0000
100.0000
00000
ltrigg-rtg2SNP*segdupwithalthomalt
0.0000
100.0000
00000
mlin-fermikitINDELD1_5map_l150_m1_e0hetalt
60.0000
42.8571
100.0000
95.7143
34300
mlin-fermikitINDELD1_5map_l150_m2_e0hetalt
60.0000
42.8571
100.0000
96.3415
34300
mlin-fermikitINDELD1_5map_l150_m2_e1hetalt
66.6667
50.0000
100.0000
95.3488
44400
mlin-fermikitINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
mlin-fermikitINDELD1_5map_l250_m1_e0hetalt
80.0000
66.6667
100.0000
92.8571
21200