PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45701-45750 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.8996 | 90.3444 | 99.9384 | 37.7684 | 1600 | 171 | 1622 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6479 | 90.3226 | 99.4083 | 67.9924 | 168 | 18 | 168 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 88.4120 | 26 | 7 | 26 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 86.0465 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | het | 93.8053 | 89.8305 | 98.1481 | 82.8025 | 53 | 6 | 53 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | het | 94.0171 | 90.1639 | 98.2143 | 83.4320 | 55 | 6 | 55 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | het | 94.0171 | 90.1639 | 98.2143 | 83.7681 | 55 | 6 | 55 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | * | 72.0000 | 60.0000 | 90.0000 | 93.7500 | 9 | 6 | 9 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | * | 84.4444 | 76.0000 | 95.0000 | 93.2432 | 19 | 6 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m1_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 94.5946 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e0 | * | 84.4444 | 76.0000 | 95.0000 | 94.0299 | 19 | 6 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 95.3125 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 93.9828 | 20 | 7 | 20 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l150_m2_e1 | homalt | 80.0000 | 75.0000 | 85.7143 | 94.8148 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 81.6689 | 133 | 10 | 133 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | * | hetalt | 99.7125 | 99.5408 | 99.8848 | 38.3960 | 867 | 4 | 867 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.2222 | 95.4545 | 99.0566 | 90.3811 | 105 | 5 | 105 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 71.3073 | 57.6923 | 93.3333 | 91.8919 | 15 | 11 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 99.1228 | 1 | 2 | 0 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 77.0270 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 75.6757 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 86.2069 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.3396 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 91.2281 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 92.3077 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 88.3721 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 88.8889 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 95.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 93.5484 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 96.0784 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.2857 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 94.4444 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | hetalt | 74.3243 | 62.5000 | 91.6667 | 84.0000 | 10 | 6 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2727 | 95.5357 | 99.0741 | 72.3785 | 107 | 5 | 107 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.5858 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6077 | 96.2264 | 99.0291 | 92.6795 | 102 | 4 | 102 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.5714 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 97.9592 | 100.0000 | 96.0000 | 97.8485 | 24 | 0 | 24 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 96.7742 | 100.0000 | 93.7500 | 97.9747 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | het | 97.4790 | 96.6667 | 98.3051 | 96.2753 | 58 | 2 | 58 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | het | 97.7099 | 96.9697 | 98.4615 | 96.4364 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |