PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45651-45700 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | * | hetalt | 94.2306 | 89.1325 | 99.9472 | 55.4588 | 1870 | 228 | 1892 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | het | 98.7816 | 97.7444 | 99.8410 | 62.2675 | 650 | 15 | 628 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 95.9028 | 92.2813 | 99.8201 | 63.6601 | 538 | 45 | 555 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.7230 | 81.4815 | 95.0000 | 91.0714 | 22 | 5 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.6139 | 90.0293 | 99.6904 | 56.8182 | 307 | 34 | 322 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.8795 | 90.5594 | 99.6324 | 53.1842 | 259 | 27 | 271 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.6120 | 90.0000 | 99.7222 | 61.7428 | 342 | 38 | 359 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.5480 | 89.9642 | 99.6241 | 63.9077 | 251 | 28 | 265 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 93.3333 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.8185 | 95.7447 | 97.9167 | 79.0393 | 45 | 2 | 47 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 89.5833 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 81.7460 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.0000 | 88.4615 | 95.8333 | 93.6000 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8042 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.0000 | 88.4615 | 95.8333 | 93.6675 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8333 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 89.6552 | 86.6667 | 92.8571 | 94.6970 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 96.1905 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | * | 89.6552 | 86.6667 | 92.8571 | 94.7170 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 96.1905 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.4138 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 94.2238 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 93.2432 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | * | hetalt | 95.4134 | 91.2372 | 99.9903 | 60.4923 | 10214 | 981 | 10271 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002complexvar | hetalt | 94.9524 | 90.4403 | 99.9382 | 69.6987 | 1561 | 165 | 1618 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | hetalt | 95.4154 | 91.2409 | 99.9902 | 55.7998 | 10198 | 979 | 10253 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7904 | 99.6859 | 99.8951 | 79.4035 | 952 | 3 | 952 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8557 | 100.0000 | 99.7118 | 78.8544 | 346 | 0 | 346 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 71.8285 | 56.3107 | 99.1525 | 56.4576 | 116 | 90 | 117 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.3333 | 81.4815 | 66.6667 | 96.8750 | 22 | 5 | 2 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.1169 | 89.2193 | 99.5833 | 74.7102 | 240 | 29 | 239 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.5995 | 78.4314 | 96.6667 | 94.1860 | 40 | 11 | 29 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0354 | 98.2979 | 99.7840 | 66.4006 | 462 | 8 | 462 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 53.8462 | 23 | 2 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 88.0000 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 87.2624 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5517 | 95.4545 | 97.6744 | 93.4947 | 42 | 2 | 42 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6292 | 95.5556 | 97.7273 | 94.5342 | 43 | 2 | 43 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7033 | 95.6522 | 97.7778 | 94.5718 | 44 | 2 | 44 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | * | hetalt | 94.4979 | 89.5802 | 99.9870 | 36.2816 | 7660 | 891 | 7700 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 95.7931 | 91.9551 | 99.9655 | 41.6230 | 2869 | 251 | 2898 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.4655 | 91.3500 | 99.9693 | 40.4962 | 3221 | 305 | 3261 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2025 | 93.8272 | 98.7013 | 76.2346 | 76 | 5 | 76 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.9982 | 90.5081 | 99.9572 | 32.8251 | 2298 | 241 | 2334 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.5177 | 91.4612 | 99.9507 | 31.0075 | 2003 | 187 | 2026 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.9357 | 90.3933 | 99.9588 | 34.5998 | 2390 | 254 | 2426 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.4655 | 91.3500 | 99.9693 | 40.4962 | 3221 | 305 | 3261 | 1 | 1 | 100.0000 | |