PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44201-44250 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | hetalt | 80.5942 | 67.5311 | 99.9233 | 34.2251 | 1302 | 626 | 1302 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | * | 76.1905 | 66.6667 | 88.8889 | 75.6757 | 8 | 4 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | het | 80.0000 | 75.0000 | 85.7143 | 76.6667 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.6089 | 86.4097 | 99.7664 | 61.6487 | 426 | 67 | 427 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 90.0617 | 82.2222 | 99.5536 | 68.6275 | 222 | 48 | 223 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 65.8537 | 49.2027 | 99.5392 | 51.5625 | 216 | 223 | 216 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.1220 | 60.6299 | 98.7179 | 63.3803 | 77 | 50 | 77 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.2661 | 65.8537 | 99.5392 | 53.0303 | 216 | 112 | 216 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.3333 | 71.7391 | 99.3976 | 70.7746 | 165 | 65 | 165 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | * | 63.5659 | 47.1264 | 97.6190 | 95.5603 | 41 | 46 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | het | 71.2329 | 56.5217 | 96.2963 | 96.3563 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | * | 62.1212 | 45.5556 | 97.6190 | 95.9184 | 41 | 49 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | het | 69.3333 | 54.1667 | 96.2963 | 96.6871 | 26 | 22 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.9929 | 44.3299 | 97.7273 | 95.8015 | 43 | 54 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | het | 70.0000 | 54.9020 | 96.5517 | 96.4976 | 28 | 23 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.6924 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.5960 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.0000 | 60.8696 | 97.6744 | 74.5562 | 42 | 27 | 42 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 99.2754 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.4545 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9480 | 87.0130 | 99.7519 | 36.5354 | 402 | 60 | 402 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 76.0000 | 98.2759 | 73.0233 | 57 | 18 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 53.8462 | 87.5000 | 93.7500 | 7 | 6 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | homalt | 70.5000 | 54.6512 | 99.2958 | 90.2204 | 141 | 117 | 141 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 74.3590 | 60.4167 | 96.6667 | 96.4200 | 29 | 19 | 29 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 73.1707 | 58.8235 | 96.7742 | 96.3869 | 30 | 21 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | * | 63.2075 | 46.3668 | 99.2593 | 97.4310 | 134 | 155 | 134 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m0_e0 | het | 64.2140 | 47.5248 | 98.9691 | 97.6861 | 96 | 106 | 96 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | hetalt | 75.9124 | 61.9048 | 98.1132 | 96.3423 | 52 | 32 | 52 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | segdup | * | 95.9962 | 92.3844 | 99.9019 | 96.4456 | 1019 | 84 | 1018 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | segdup | het | 96.4899 | 93.3526 | 99.8454 | 96.8946 | 646 | 46 | 646 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 83.3333 | 83.3333 | 83.3333 | 98.4085 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 100.0000 | 75.0000 | 98.6111 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | * | 82.9787 | 75.0000 | 92.8571 | 92.6316 | 6 | 2 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | het | 63.1579 | 50.0000 | 85.7143 | 93.1373 | 2 | 2 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 99.1736 | 100.0000 | 98.3607 | 83.9895 | 2 | 0 | 60 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.2701 | 100.0000 | 98.5507 | 78.2334 | 5 | 0 | 68 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | hetalt | 99.6016 | 100.0000 | 99.2063 | 70.4918 | 16 | 0 | 125 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 76.4120 | 9 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | hetalt | 99.7260 | 100.0000 | 99.4536 | 69.3980 | 30 | 0 | 182 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | hetalt | 99.7442 | 100.0000 | 99.4898 | 71.2188 | 30 | 0 | 195 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | hetalt | 99.7481 | 100.0000 | 99.4975 | 71.0756 | 30 | 0 | 198 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | hetalt | 98.9474 | 100.0000 | 97.9167 | 79.8319 | 3 | 0 | 47 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | hetalt | 99.5781 | 100.0000 | 99.1597 | 73.6142 | 20 | 0 | 118 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | hetalt | 99.6078 | 100.0000 | 99.2188 | 75.1456 | 20 | 0 | 127 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | hetalt | 99.6139 | 100.0000 | 99.2308 | 75.0480 | 20 | 0 | 129 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 85.7143 | 93.5185 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | hetalt | 98.1132 | 100.0000 | 96.2963 | 87.5000 | 4 | 0 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 87.6984 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |