PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
31851-31900 / 86044 show all
jlack-gatkINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
95.5882
60600
jlack-gatkINDELD6_15segduphetalt
92.3077
85.7143
100.0000
90.2552
4274200
jlack-gatkINDELD6_15segdupwithalt*
0.0000
100.0000
00000
jlack-gatkINDELD6_15segdupwithalthet
0.0000
100.0000
00000
jlack-gatkINDELD6_15segdupwithalthetalt
0.0000
100.0000
00000
jlack-gatkINDELD6_15segdupwithalthomalt
0.0000
100.0000
00000
jlack-gatkINDELD6_15tech_badpromoters*
100.0000
100.0000
100.0000
51.4286
1701700
jlack-gatkINDELD6_15tech_badpromotershet
100.0000
100.0000
100.0000
52.3810
1001000
jlack-gatkINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10100
jlack-gatkINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
53.8462
60600
jlack-gatkINDELI16_PLUSdecoy*
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSdecoyhet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSdecoyhetalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSdecoyhomalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSfunc_cds*
95.6522
91.6667
100.0000
78.8462
1111100
jlack-gatkINDELI16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
71.8750
90900
jlack-gatkINDELI16_PLUSfunc_cdshetalt
0.0000
100.0000
01000
jlack-gatkINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
88.2353
20200
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.1392
83.7209
100.0000
77.1429
72148000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
97.1429
94.4444
100.0000
84.6774
1711900
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
98.5507
97.1429
100.0000
75.5102
3413600
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
100.0000
100.0000
100.0000
75.2089
8908900
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
75.2336
5305300
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
64.2857
2002000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
82.0225
1601600
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
88.6792
79.6610
100.0000
71.7391
47125200
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9844
10100
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.0629
98.1432
100.0000
42.5707
111021111700
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.9121
94.0092
100.0000
39.9441
2041321500
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
99.0000
10100
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
99.1416
98.2979
100.0000
68.1568
462846300
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5185
99.0415
100.0000
36.0825
310331000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
97.7778
95.6522
100.0000
12.0000
2212200