PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30951-31000 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.6121 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 92.9577 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.8889 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 91.3043 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.5134 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.9091 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.7835 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.7368 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0233 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.1220 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.8333 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.3396 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 95.3642 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.4026 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.7273 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.7583 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | * | 99.1354 | 98.2857 | 100.0000 | 92.5444 | 172 | 3 | 172 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 93.5280 | 82 | 1 | 82 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.1376 | 43 | 2 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.2185 | 47 | 0 | 47 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 53.5714 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 56.2500 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | * | hetalt | 99.8851 | 99.7704 | 100.0000 | 49.0323 | 869 | 2 | 869 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 39.9610 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 23.2143 | 860 | 2 | 860 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | func_cds | homalt | 99.9928 | 99.9857 | 100.0000 | 22.0422 | 6978 | 1 | 6978 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||