PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 538 539 540 541 542 543 544 545 546 ... 1720 1721 » 27051-27100 / 86044 show all
ckim-vqsr	INDEL	C6_15	map_l250_m1_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m1_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m2_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m2_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m2_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m2_e1	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m2_e1	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_l250_m2_e1	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_siren	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_siren	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_siren	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	map_siren	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	segdup	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	segdup	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	segdup	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	segdup	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	segdupwithalt	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	segdupwithalt	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	segdupwithalt	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	tech_badpromoters	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	tech_badpromoters	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	tech_badpromoters	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	D16_PLUS	decoy	*	100.0000	100.0000	100.0000	99.5807	6	0	6	0	0
ckim-vqsr	INDEL	D16_PLUS	decoy	het	100.0000	100.0000	100.0000	99.6572	4	0	4	0	0
ckim-vqsr	INDEL	D16_PLUS	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	INDEL	D16_PLUS	decoy	homalt	100.0000	100.0000	100.0000	99.1304	2	0	2	0	0
ckim-vqsr	INDEL	D16_PLUS	func_cds	*	100.0000	100.0000	100.0000	83.3333	12	0	12	0	0
ckim-vqsr	INDEL	D16_PLUS	func_cds	het	100.0000	100.0000	100.0000	85.4545	8	0	8	0	0
ckim-vqsr	INDEL	D16_PLUS	func_cds	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	D16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	76.4706	4	0	4	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.1914	9	0	9	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	100.0000	100.0000	100.0000	99.8107	6	0	6	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7862	99.5733	100.0000	46.7275	700	3	700	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8285	99.6575	100.0000	18.5754	582	2	583	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	97.8947	95.8763	100.0000	24.3902	93	4	93	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	38.2353	21	0	21	0	0
dgrover-gatk	INDEL	D6_15	map_l100_m0_e0	homalt	95.6522	91.6667	100.0000	90.7950	22	2	22	0	0
dgrover-gatk	INDEL	D6_15	map_l100_m1_e0	homalt	97.6000	95.3125	100.0000	86.8534	61	3	61	0	0
dgrover-gatk	INDEL	D6_15	map_l100_m2_e0	homalt	97.6378	95.3846	100.0000	87.3727	62	3	62	0	0
dgrover-gatk	INDEL	D6_15	map_l100_m2_e1	homalt	97.7099	95.5224	100.0000	87.3016	64	3	64	0	0
dgrover-gatk	INDEL	D6_15	map_l125_m0_e0	*	97.8261	95.7447	100.0000	94.1634	45	2	45	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge