PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26401-26450 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 79.6610 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 71.4286 | 55.5556 | 100.0000 | 92.8571 | 5 | 4 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.0000 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.5795 | 91.5332 | 100.0000 | 25.9259 | 1200 | 111 | 1200 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.4545 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | homalt | 63.5928 | 46.6199 | 100.0000 | 57.1053 | 1793 | 2053 | 1793 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 75.7895 | 23 | 18 | 23 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 77.3585 | 24 | 18 | 24 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 85.7143 | 4 | 5 | 4 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l125_m0_e0 | homalt | 60.6213 | 43.4939 | 100.0000 | 64.5894 | 966 | 1255 | 966 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 78.5714 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 81.0127 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 81.0127 | 15 | 15 | 15 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | map_l150_m0_e0 | homalt | 57.8158 | 40.6627 | 100.0000 | 71.4889 | 540 | 788 | 540 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m1_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 85.7143 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.0968 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 87.3016 | 8 | 12 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | map_l250_m0_e0 | homalt | 57.0370 | 39.8964 | 100.0000 | 90.1911 | 77 | 116 | 77 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m1_e0 | homalt | 52.7945 | 35.8645 | 100.0000 | 85.4226 | 307 | 549 | 307 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e0 | homalt | 53.0196 | 36.0726 | 100.0000 | 87.3075 | 338 | 599 | 338 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e1 | homalt | 53.1056 | 36.1522 | 100.0000 | 87.3614 | 342 | 604 | 342 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 72.4551 | 46 | 35 | 46 | 0 | 0 | ||
| ckim-isaac | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||