PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
2451-2500 / 86044 show all
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
71.9914
525051900
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
20200
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
20200
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.2500
30300
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
97.0120
1501500
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
96.2963
10100
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
94.1176
88.8889
100.0000
95.1220
81800
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
99.0099
10100
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.8095
10100
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtvmap_l100_m0_e0hetalt
81.4815
68.7500
100.0000
92.3077
1151100
qzeng-customSNPtvmap_l100_m1_e0hetalt
81.1594
68.2927
100.0000
88.6179
28132800
qzeng-customSNPtvmap_l100_m2_e0hetalt
81.6901
69.0476
100.0000
89.1791
29132900
qzeng-customSNPtvmap_l100_m2_e1hetalt
82.1918
69.7674
100.0000
88.8476
30133000
qzeng-customSNPtvmap_l125_m0_e0hetalt
61.5385
44.4444
100.0000
96.6942
45400
qzeng-customSNPtvmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
89.7959
20102000
qzeng-customSNPtvmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.1111
20102000
qzeng-customSNPtvmap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
91.1111
20102000
qzeng-customSNPtvmap_l150_m0_e0hetalt
80.0000
66.6667
100.0000
98.0392
21200
qzeng-customSNPtvmap_l150_m1_e0hetalt
75.0000
60.0000
100.0000
92.6829
1281200
qzeng-customSNPtvmap_l150_m2_e0hetalt
75.0000
60.0000
100.0000
93.6842
1281200
qzeng-customSNPtvmap_l150_m2_e1hetalt
75.0000
60.0000
100.0000
93.7173
1281200
qzeng-customSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
qzeng-customSNPtvmap_l250_m1_e0hetalt
40.0000
25.0000
100.0000
99.0991
13100
qzeng-customSNPtvmap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
98.3740
23200
qzeng-customSNPtvmap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
98.3871
23200
qzeng-customSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.9228
70700