PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22201-22250 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | homalt | 73.5296 | 58.1398 | 100.0000 | 74.6665 | 5357 | 3857 | 5356 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | homalt | 73.6570 | 58.2993 | 100.0000 | 74.6090 | 5423 | 3879 | 5422 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.9796 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | homalt | 54.3607 | 37.3255 | 100.0000 | 86.5727 | 829 | 1392 | 829 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0635 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | homalt | 63.6417 | 46.6724 | 100.0000 | 80.2470 | 2735 | 3125 | 2735 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m2_e0 | homalt | 64.4820 | 47.5819 | 100.0000 | 81.7585 | 2863 | 3154 | 2863 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | homalt | 64.6312 | 47.7445 | 100.0000 | 81.7242 | 2900 | 3174 | 2900 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m0_e0 | homalt | 47.8809 | 31.4759 | 100.0000 | 91.3619 | 418 | 910 | 418 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | hetalt | 62.0690 | 45.0000 | 100.0000 | 94.3396 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | homalt | 57.2617 | 40.1166 | 100.0000 | 85.3494 | 1583 | 2363 | 1583 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | hetalt | 62.0690 | 45.0000 | 100.0000 | 95.1613 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | homalt | 58.5484 | 41.3911 | 100.0000 | 86.3852 | 1690 | 2393 | 1690 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m2_e1 | hetalt | 62.0690 | 45.0000 | 100.0000 | 95.1872 | 9 | 11 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l150_m2_e1 | homalt | 58.8356 | 41.6788 | 100.0000 | 86.2884 | 1723 | 2411 | 1723 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | homalt | 37.1308 | 22.7979 | 100.0000 | 98.3841 | 44 | 149 | 44 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | homalt | 39.7004 | 24.7664 | 100.0000 | 96.2311 | 212 | 644 | 212 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | homalt | 42.1230 | 26.6809 | 100.0000 | 96.2620 | 250 | 687 | 250 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | homalt | 42.3333 | 26.8499 | 100.0000 | 96.2581 | 254 | 692 | 254 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1771 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | tech_badpromoters | * | 91.7293 | 84.7222 | 100.0000 | 73.8197 | 61 | 11 | 61 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | tech_badpromoters | het | 93.5484 | 87.8788 | 100.0000 | 81.4103 | 29 | 4 | 29 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | tv | tech_badpromoters | homalt | 90.1408 | 82.0513 | 100.0000 | 58.4416 | 32 | 7 | 32 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | * | hetalt | 0.0000 | 0.4042 | 0.0000 | 0.0000 | 102 | 25135 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | HG002complexvar | hetalt | 0.0000 | 2.6494 | 0.0000 | 0.0000 | 98 | 3601 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 0.3892 | 0.0000 | 0.0000 | 98 | 25082 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9255 | 3 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | func_cds | homalt | 94.8837 | 90.2655 | 100.0000 | 28.4698 | 204 | 22 | 201 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.1831 | 0.0000 | 0.0000 | 7 | 3817 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 33.3333 | 20.0000 | 100.0000 | 99.8540 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4605 | 0.0000 | 0.0000 | 71 | 15346 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3711 | 0.0000 | 0.0000 | 62 | 16643 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.5988 | 0.0000 | 0.0000 | 1 | 166 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||