PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18801-18850 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdupwithalt | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdupwithalt | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | segdupwithalt | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D16_PLUS | decoy | * | 80.0000 | 66.6667 | 100.0000 | 99.5614 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | decoy | het | 66.6667 | 50.0000 | 100.0000 | 99.7531 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 99.3902 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 62.5000 | 45.4545 | 100.0000 | 87.5000 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 99.3590 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 73.3333 | 57.8947 | 100.0000 | 78.0000 | 11 | 8 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 73.6842 | 58.3333 | 100.0000 | 69.5652 | 7 | 5 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.5686 | 93.3649 | 100.0000 | 48.0211 | 197 | 14 | 197 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 84.7682 | 73.5632 | 100.0000 | 83.5821 | 64 | 23 | 66 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 81.8182 | 69.2308 | 100.0000 | 87.0748 | 36 | 16 | 38 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.7143 | 75.0000 | 100.0000 | 64.0000 | 9 | 3 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.4762 | 82.6087 | 100.0000 | 77.1084 | 19 | 4 | 19 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 32.0988 | 19.1176 | 100.0000 | 99.4775 | 13 | 55 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 27.4510 | 15.9091 | 100.0000 | 99.6394 | 7 | 37 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 20.0000 | 11.1111 | 100.0000 | 99.5614 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.4326 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 74.0741 | 58.8235 | 100.0000 | 75.2066 | 60 | 42 | 60 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||