PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18151-18200 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 82.4074 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 83.8983 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.0336 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1579 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.6087 | 39 | 0 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9788 | 8 | 2 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9877 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9050 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9296 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 69.2308 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.6395 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.9117 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 99.5327 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 11.7647 | 6.2500 | 100.0000 | 99.9953 | 1 | 15 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 60.0000 | 42.8571 | 100.0000 | 99.9796 | 9 | 12 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0755 | 69.6000 | 100.0000 | 36.4964 | 87 | 38 | 87 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.3820 | 89.3617 | 100.0000 | 56.7010 | 42 | 5 | 42 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | hetalt | 68.0000 | 51.5152 | 100.0000 | 97.2447 | 17 | 16 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 98.8399 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | homalt | 63.7890 | 46.8310 | 100.0000 | 93.6576 | 133 | 151 | 133 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | hetalt | 73.0159 | 57.5000 | 100.0000 | 97.2121 | 23 | 17 | 23 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | homalt | 70.5570 | 54.5082 | 100.0000 | 91.1628 | 399 | 333 | 399 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.4249 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | homalt | 71.3322 | 55.4391 | 100.0000 | 91.6370 | 423 | 340 | 423 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | hetalt | 71.6418 | 55.8140 | 100.0000 | 97.4737 | 24 | 19 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | homalt | 71.4286 | 55.5556 | 100.0000 | 91.6796 | 430 | 344 | 430 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.1453 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | homalt | 57.3913 | 40.2439 | 100.0000 | 96.0667 | 66 | 98 | 66 | 0 | 0 | ||