PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
17151-17200 / 86044 show all | |||||||||||||||
asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.0079 | 94.1896 | 100.0000 | 84.1944 | 308 | 19 | 309 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.9873 | 19 | 0 | 19 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.1342 | 94.4282 | 100.0000 | 85.3437 | 322 | 19 | 322 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 19 | 0 | 19 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.1514 | 94.4606 | 100.0000 | 85.5551 | 324 | 19 | 324 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5909 | 3 | 0 | 3 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.4848 | 97.0149 | 100.0000 | 89.9691 | 65 | 2 | 65 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7143 | 9 | 0 | 9 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.1429 | 94.4444 | 100.0000 | 87.6802 | 187 | 11 | 188 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3115 | 9 | 0 | 9 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.1867 | 94.5274 | 100.0000 | 89.0230 | 190 | 11 | 191 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0317 | 10 | 0 | 10 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.2292 | 94.6078 | 100.0000 | 89.1011 | 193 | 11 | 194 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 97.6048 | 8 | 1 | 8 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1982 | 2 | 0 | 2 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 94.9431 | 40 | 4 | 40 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 2 | 0 | 2 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.3488 | 91.1111 | 100.0000 | 95.5867 | 41 | 4 | 41 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6014 | 2 | 0 | 2 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.4545 | 91.3043 | 100.0000 | 95.5789 | 42 | 4 | 42 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1889 | 45 | 3 | 46 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9942 | 0 | 0 | 1 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 0.0000 | 100.0000 | 99.9911 | 0 | 0 | 1 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | * | 95.2381 | 90.9091 | 100.0000 | 56.5217 | 20 | 2 | 20 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
asubramanian-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 91.6667 | 84.6154 | 100.0000 | 62.0690 | 11 | 2 | 11 | 0 | 0 | ||
asubramanian-gatk | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | func_cds | het | 95.6522 | 91.6667 | 100.0000 | 45.0000 | 22 | 2 | 22 | 0 | 0 | ||
asubramanian-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.4839 | 91.3580 | 100.0000 | 80.1075 | 74 | 7 | 74 | 0 | 0 | ||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.0370 | 77.0492 | 100.0000 | 56.0748 | 47 | 14 | 47 | 0 | 0 | ||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9827 | 96.0452 | 100.0000 | 74.9267 | 170 | 7 | 171 | 0 | 0 | ||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3415 | 92.9412 | 100.0000 | 58.7629 | 79 | 6 | 80 | 0 | 0 | ||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7552 | 97.5410 | 100.0000 | 72.2864 | 119 | 3 | 120 | 0 | 0 | ||
asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 60.7692 | 50 | 2 | 51 | 0 | 0 |