PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
16501-16550 / 86044 show all
anovak-vgSNPtvsegdupwithalt*
0.0000
100.0000
00000
anovak-vgSNPtvsegdupwithalthet
0.0000
100.0000
00000
anovak-vgSNPtvsegdupwithalthetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
anovak-vgSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
anovak-vgSNPtvtech_badpromotershomalt
93.1507
87.1795
100.0000
36.5385
3453300
astatham-gatkINDEL*decoy*
100.0000
100.0000
100.0000
99.9347
1001000
astatham-gatkINDEL*decoyhet
100.0000
100.0000
100.0000
99.9426
60600
astatham-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8374
10100
astatham-gatkINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9296
30300
astatham-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
60.0000
41400
astatham-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.3816
2002000
astatham-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4222
1201200
astatham-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.7391
30300
astatham-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5305
50500
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
93.2907
87.4251
100.0000
68.6975
1462114900
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.4518
1701700
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4947
1001000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.3855
30300
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.6150
40400
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.7612
30300
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.9592
20200
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.2963
10100
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8842
1601600
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9633
2102100
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.5410
95.2000
100.0000
29.2398
119612100
astatham-gatkINDEL*map_l100_m0_e0hetalt
96.8750
93.9394
100.0000
91.2088
3123200
astatham-gatkINDEL*map_l100_m1_e0hetalt
95.3586
91.1290
100.0000
86.6040
1131111400
astatham-gatkINDEL*map_l100_m2_e0hetalt
95.3975
91.2000
100.0000
87.4865
1141111600
astatham-gatkINDEL*map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
87.2518
1201212200
astatham-gatkINDEL*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
95.4167
1101100
astatham-gatkINDEL*map_l125_m1_e0hetalt
97.4359
95.0000
100.0000
92.4901
3823800
astatham-gatkINDEL*map_l125_m2_e0hetalt
97.5610
95.2381
100.0000
93.1507
4024000
astatham-gatkINDEL*map_l125_m2_e1hetalt
96.3855
93.0233
100.0000
93.2660
4034000
astatham-gatkINDEL*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
95.0820
90900
astatham-gatkINDEL*map_l150_m1_e0hetalt
97.5610
95.2381
100.0000
94.7507
2012000
astatham-gatkINDEL*map_l150_m2_e0hetalt
97.5610
95.2381
100.0000
95.4233
2012000
astatham-gatkINDEL*map_l150_m2_e1hetalt
95.4545
91.3043
100.0000
95.3020
2122100
astatham-gatkINDEL*map_l250_m0_e0hetalt
0.0000
100.0000
00000
astatham-gatkINDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.0297
60600
astatham-gatkINDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
97.5806
60600
astatham-gatkINDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
97.6378
60600
astatham-gatkINDEL*map_sirenhetalt
96.8685
93.9271
100.0000
86.9855
2321523400
astatham-gatkINDEL*segduphetalt
96.8254
93.8462
100.0000
94.7122
122812400
astatham-gatkINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9974
10100