PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13001-13050 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 68.7500 | 15 | 1 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | hetalt | 97.5000 | 95.1220 | 100.0000 | 70.4545 | 39 | 2 | 39 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 72.7891 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m2_e1 | hetalt | 97.6190 | 95.3488 | 100.0000 | 72.2973 | 41 | 2 | 41 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 77.1429 | 8 | 1 | 8 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 76.0684 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 76.3158 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 80.0000 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 80.0000 | 18 | 2 | 18 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.8919 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 90.9091 | 4 | 1 | 4 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_siren | hetalt | 98.1132 | 96.2963 | 100.0000 | 69.5312 | 78 | 3 | 78 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 7 | 0 | 7 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 55.5556 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | * | * | hetalt | 0.0000 | 93.6165 | 0.0000 | 0.0000 | 23626 | 1611 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | HG002complexvar | hetalt | 0.0000 | 90.1865 | 0.0000 | 0.0000 | 3336 | 363 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 93.6418 | 0.0000 | 0.0000 | 23579 | 1601 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9561 | 10 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9628 | 6 | 0 | 7 | 0 | 0 | ||
| cchapple-custom | INDEL | * | decoy | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9250 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | * | func_cds | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 4 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.5063 | 0.0000 | 0.0000 | 3308 | 516 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 94.7368 | 90.0000 | 100.0000 | 99.4547 | 18 | 2 | 18 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.3674 | 12 | 0 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6774 | 3 | 2 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.5114 | 0.0000 | 0.0000 | 14725 | 692 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 93.7863 | 0.0000 | 0.0000 | 15667 | 1038 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.8263 | 0.0000 | 0.0000 | 145 | 22 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 93.7500 | 88.2353 | 100.0000 | 99.5292 | 15 | 2 | 15 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4286 | 10 | 0 | 13 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7805 | 2 | 2 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 96.1373 | 0.0000 | 0.0000 | 224 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.4545 | 0.0000 | 0.0000 | 126 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.2651 | 0.0000 | 0.0000 | 2349 | 374 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.4790 | 3 | 0 | 3 | 0 | 0 | ||