PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
12551-12600 / 86044 show all
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7183
99.4382
100.0000
81.1902
177117700
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5349
99.0741
100.0000
80.6985
107110500
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.9740
3503700
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
85.5967
3503500
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
100.0000
100.0000
100.0000
75.6164
8908900
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
75.2336
5305300
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
64.2857
2002000
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
83.1579
1601600
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.1538
92.5926
100.0000
92.2481
2522000
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.7273
86.4407
100.0000
72.6829
5185600
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.6667
50.0000
100.0000
93.3333
22200
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
50.0000
100.0000
11000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
66.6667
50.0000
100.0000
71.4286
11200
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
96.5517
93.3333
100.0000
88.7097
1411400
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
96.2963
92.8571
100.0000
60.0000
2622800
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.8439
97.7143
100.0000
66.4078
171417300
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
100.0000
100.0000
100.0000
84.3206
4504500
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
93.8776
88.4615
100.0000
90.8367
2332300
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
100.0000
100.0000
30000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
93.0233
86.9565
100.0000
74.1573
2032300
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
100.0000
100.0000
100.0000
78.8889
3703800
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
100.0000
100.0000
100.0000
82.6087
1601600
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
65.8537
1301400
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
82.9787
80800
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
85.7143
75.0000
100.0000
75.0000
31300
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
50.0000
100.0000
11000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
40.0000
20300
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
bgallagher-sentieonINDELI16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
87.5000
10100
bgallagher-sentieonINDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
91.6667
21200
bgallagher-sentieonINDELI16_PLUSmap_l100_m2_e0hetalt
80.0000
66.6667
100.0000
93.5484
21200
bgallagher-sentieonINDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
93.7500
21200
bgallagher-sentieonINDELI16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
83.3333
10100
bgallagher-sentieonINDELI16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
88.2353
21200