PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
9301-9350 / 86044 show all
jli-customINDELD6_15map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
96.9231
20200
jli-customINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
95.2756
60600
jli-customINDELD6_15segduphet
96.6292
93.4783
100.0000
94.4373
8668600
jli-customINDELD6_15segduphetalt
96.8421
93.8776
100.0000
90.2335
4634600
jli-customINDELD6_15segdupwithalt*
0.0000
100.0000
00000
jli-customINDELD6_15segdupwithalthet
0.0000
100.0000
00000
jli-customINDELD6_15segdupwithalthetalt
0.0000
100.0000
00000
jli-customINDELD6_15segdupwithalthomalt
0.0000
100.0000
00000
jli-customINDELD6_15tech_badpromoters*
96.9697
94.1176
100.0000
51.5152
1611600
jli-customINDELD6_15tech_badpromotershet
94.7368
90.0000
100.0000
52.6316
91900
jli-customINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10100
jli-customINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
53.8462
60600
jli-customINDELI16_PLUSdecoy*
0.0000
100.0000
00000
jli-customINDELI16_PLUSdecoyhet
0.0000
100.0000
00000
jli-customINDELI16_PLUSdecoyhetalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSdecoyhomalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSfunc_cds*
95.6522
91.6667
100.0000
66.6667
1111100
jli-customINDELI16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
52.6316
90900
jli-customINDELI16_PLUSfunc_cdshetalt
0.0000
100.0000
01000
jli-customINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
83.3333
20200
jli-customINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
92.6554
86.3158
100.0000
88.5321
82137500
jli-customINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.8239
84.8837
100.0000
75.5352
73138000
jli-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
94.4000
89.3939
100.0000
85.7855
5975700
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
97.1429
94.4444
100.0000
81.0000
1711900
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
97.1429
94.4444
100.0000
75.6691
102610000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.0588
94.2857
100.0000
74.2647
3323500
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
67.0807
5305300
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
65.4545
1911900
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
89.7959
81.4815
100.0000
90.4762
2251800
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
89.7196
81.3559
100.0000
72.0430
48115200
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.6667
50.0000
100.0000
91.6667
22200
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
50.0000
100.0000
11000
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
66.6667
50.0000
100.0000
71.4286
11200
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
92.8571
86.6667
100.0000
84.7059
1321300
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
96.2963
92.8571
100.0000
57.5758
2622800
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
jli-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000