PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
9201-9250 / 86044 show all
jli-customINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
95.7447
91.8367
100.0000
25.0000
4544500
jli-customINDELD1_5map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
98.5612
21200
jli-customINDELD1_5map_l125_m1_e0hetalt
81.8182
69.2308
100.0000
96.9388
94900
jli-customINDELD1_5map_l125_m2_e0hetalt
84.6154
73.3333
100.0000
96.7164
1141100
jli-customINDELD1_5map_l125_m2_e1hetalt
84.6154
73.3333
100.0000
96.7930
1141100
jli-customINDELD1_5map_l150_m0_e0hetalt
66.6667
50.0000
100.0000
99.0826
11100
jli-customINDELD1_5map_l150_m1_e0hetalt
72.7273
57.1429
100.0000
98.3193
43400
jli-customINDELD1_5map_l150_m2_e0hetalt
72.7273
57.1429
100.0000
98.4962
43400
jli-customINDELD1_5map_l150_m2_e1hetalt
76.9231
62.5000
100.0000
98.1685
53500
jli-customINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
jli-customINDELD1_5map_l250_m0_e0homalt
96.0000
92.3077
100.0000
97.1292
1211200
jli-customINDELD1_5map_l250_m1_e0hetalt
50.0000
33.3333
100.0000
99.2248
12100
jli-customINDELD1_5map_l250_m1_e0homalt
98.2143
96.4912
100.0000
93.6782
5525500
jli-customINDELD1_5map_l250_m2_e0hetalt
50.0000
33.3333
100.0000
99.3464
12100
jli-customINDELD1_5map_l250_m2_e0homalt
98.3051
96.6667
100.0000
94.2517
5825800
jli-customINDELD1_5map_l250_m2_e1hetalt
50.0000
33.3333
100.0000
99.3671
12100
jli-customINDELD1_5map_l250_m2_e1homalt
98.3051
96.6667
100.0000
94.3961
5825800
jli-customINDELD1_5segduphetalt
99.0291
98.0769
100.0000
95.5932
5115200
jli-customINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9937
10100
jli-customINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9899
10100
jli-customINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
jli-customINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
jli-customINDELD1_5tech_badpromoters*
97.2973
94.7368
100.0000
48.5714
1811800
jli-customINDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
58.8235
71700
jli-customINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
jli-customINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
43.7500
90900
jli-customINDELD6_15decoy*
100.0000
100.0000
100.0000
99.8900
10100
jli-customINDELD6_15decoyhet
0.0000
100.0000
00000
jli-customINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1736
10100
jli-customINDELD6_15decoyhomalt
0.0000
100.0000
00000
jli-customINDELD6_15func_cds*
98.8235
97.6744
100.0000
52.8090
4214200
jli-customINDELD6_15func_cdshet
98.2456
96.5517
100.0000
47.1698
2812800
jli-customINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
jli-customINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
61.2903
1201200
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
96.1538
60600
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
96.7742
30300
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
jli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.6744
10100
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
94.5946
89.7436
100.0000
53.9474
3543500
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
76.5027
4304300
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.0803
40400
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.5904
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
89.4737
20200
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
90.0000
10100
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
66.6667
10100
jli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.6764
99.3548
100.0000
82.9268
154115400
jli-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
81.0742
7407400