PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
85851-85900 / 86044 show all
eyeh-varpipeINDEL*HG002compoundhethomalt
7.7309
93.0029
4.0330
55.0612
638485761370613667
99.7155
ciseli-customINDEL*HG002complexvar*
81.0665
80.3871
81.7575
57.5412
618451508961574137398055
58.6287
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50*
61.6156
61.1636
62.0744
51.1512
2238114211225331376710331
75.0418
anovak-vgSNPtimap_sirenhet
85.3428
91.0279
80.3260
62.0963
56785559756323137953334
24.1682
anovak-vgSNPtv*het
97.9352
98.2070
97.6649
27.4537
58109510609580225138734566
32.9129
gduggal-snapvardSNPti*het
98.9307
98.9471
98.9142
25.7701
1268399134971263991138752046
14.7459
gduggal-snapfbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.4732
99.0329
79.9484
69.7226
550935385547713914538
3.8666
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
69.6812
67.0967
72.4727
44.4064
2543112471366771393113653
98.0045
anovak-vgSNPtimap_siren*
88.3716
90.3532
86.4749
58.5181
90674968189812140473559
25.3364
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
72.4961
91.2859
60.1211
52.5391
165831583212451409213777
97.7647
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.4961
91.2859
60.1211
52.5391
165831583212451409213777
97.7647
gduggal-snapvardSNPti**
99.1158
98.9272
99.3052
22.3384
2063143223742054412143732372
16.5032
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.9906
94.2736
45.0765
50.8414
11804717118381442414189
98.3708
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50*
63.5093
59.8218
67.6813
39.7409
2189014702302171442911301
78.3214
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
48.9009
46.9867
50.9776
50.1691
1503216960150181444214205
98.3590
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
60.1585
64.6439
56.2551
36.6040
94495168186931453611429
78.6255
eyeh-varpipeINDEL**homalt
92.5348
96.0734
89.2476
55.4307
12025749151211091459114265
97.7657
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
76.7889
93.7761
65.0122
76.1162
2692517872721814648266
1.8160
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
76.7889
93.7761
65.0122
76.1162
2692517872721814648266
1.8160
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
55.8462
84.1067
41.8008
48.8238
105311990105941475014683
99.5458
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
71.2051
68.6858
73.9162
57.7097
2976513570418411476514397
97.5076
ghariani-varprowlSNPti*het
99.3626
99.8721
98.8582
25.2183
12802371639128041714789277
1.8730
ciseli-customSNPti*homalt
98.8778
99.5909
98.1749
17.4213
7997543285797240148217334
49.4838
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.9341
95.6793
44.7012
53.4443
11980541120511490814726
98.7792
mlin-fermikitSNP***
98.8629
98.2311
99.5029
16.3803
30006025403230005271499012200
81.3876
anovak-vgINDEL*HG002complexvarhomalt
75.7278
94.2021
63.3115
49.8629
254601567259401503214199
94.4585
eyeh-varpipeINDEL*HG002compoundhet*
44.6205
43.3845
45.9289
60.1662
1299816962128161508814950
99.0854
jlack-gatkSNP**het
99.5639
99.9321
99.1985
27.0831
18723151272187219015127441
2.9153
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
61.2290
64.8241
58.0117
44.0961
115516268209371515411698
77.1941
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
54.6126
50.3907
59.6067
38.4218
1612115871225511528211968
78.3144
jlack-gatkSNP***
99.7200
99.9393
99.5016
23.6335
30527651854305261215290548
3.5840
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8182
41.5354
46.3666
49.7641
1328818704132781535915221
99.1015
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.3491
46.0834
48.6863
59.5527
1474317249147321552715257
98.2611
gduggal-snapplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
67.1528
57.9879
79.7584
80.2389
547693968061674156524576
29.2359
anovak-vgSNP*map_l100_m1_e0het
80.4155
91.0315
72.0169
72.1565
41291406840830158653407
21.4749
ciseli-customINDELI1_5**
87.1708
85.4583
88.9534
56.1825
128754219091284791595513768
86.2927
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.5783
85.5583
89.6959
70.2246
80809136401390871597815625
97.7907
anovak-vgSNP*map_l100_m2_e0het
80.6158
91.0795
72.3085
73.6388
42260413941790160043433
21.4509
anovak-vgSNP*map_l100_m1_e0*
84.0947
88.8016
79.8617
69.2688
64295810863514160163537
22.0842
anovak-vgSNP*map_l100_m2_e1het
80.7046
91.1126
72.4307
73.6475
42730416842251160823449
21.4463
anovak-vgSNP*map_l100_m2_e0*
84.2603
88.9000
80.0809
71.0026
65754821064960161583566
22.0696
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
53.8310
52.3323
55.4180
55.7723
1983518067201501621013033
80.4010
anovak-vgSNP*map_l100_m2_e1*
84.3316
88.9439
80.1741
71.0026
66474826365661162373582
22.0607
anovak-vgSNPtv**
98.3366
98.3717
98.3016
24.5602
95390815790951566164416526
39.6934
jpowers-varprowlSNP***
99.5004
99.5447
99.4561
23.3348
3040706139083041157166322670
16.0534
ghariani-varprowlSNPtv*het
98.5275
99.8276
97.2608
33.9264
590670102059087716641154
0.9254
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.4169
95.5954
72.4316
76.0055
4368920134398716742965
5.7640
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.4169
95.5954
72.4316
76.0055
4368920134398716742965
5.7640
ghariani-varprowlSNPti**
99.5372
99.8784
99.1982
22.5770
208295725362083186168371291
7.6676
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
48.6764
39.2603
64.0343
80.0683
256573969430253169924936
29.0490