PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
85701-85750 / 86044 show all
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
77.1368
72.0532
82.9923
72.5173
1122343534522592687975
86.0488
ciseli-customINDELI1_5*het
91.4560
94.1106
88.9472
61.0454
7438546557480192957503
80.7208
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.9708
71.4018
70.5450
38.3153
1752270182227693018410
90.4204
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
45.0513
41.2144
49.6758
77.2450
734410475919493141766
18.9607
mlin-fermikitINDEL*HG002compoundhet*
67.1085
66.3284
67.9072
58.7807
19872100881976193399228
98.8114
mlin-fermikitSNPti**
98.9073
98.2768
99.5460
14.9446
204958135937204957293488085
86.4891
anovak-vgSNP*map_l150_m2_e0het
75.9821
90.0512
65.7151
81.6508
1813020031793393562121
22.6699
ciseli-customSNPtvHG002complexvarhet
94.7007
95.5637
93.8531
24.0959
14404766871433239387273
2.9083
ciseli-customINDELD6_15**
61.9102
60.9636
62.8867
53.8982
15906101851593894066255
66.5001
anovak-vgSNP*map_l150_m2_e1het
76.0838
90.1144
65.8336
81.6880
1835020131814994192135
22.6669
anovak-vgSNP*map_l150_m2_e0*
79.6445
85.9852
74.1747
80.0306
2738844642707694272180
23.1251
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.9133
95.0643
57.8299
64.8667
130786791296294528806
93.1655
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.9133
95.0643
57.8299
64.8667
130786791296294528806
93.1655
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.9738
55.8902
64.7011
63.2619
17554138541735894708822
93.1573
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.9738
55.8902
64.7011
63.2619
17554138541735894708822
93.1573
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
68.7607
88.3768
56.2708
60.0546
1215815991219594779356
98.7232
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
68.7607
88.3768
56.2708
60.0546
1215815991219594779356
98.7232
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.2431
51.8849
69.0334
76.6255
16296151122114794864195
44.2231
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.2431
51.8849
69.0334
76.6255
16296151122114794864195
44.2231
gduggal-snapplatINDEL*HG002complexvar*
75.2674
67.2243
85.4968
64.1998
51721252175592694871463
15.4211
anovak-vgSNP*map_l150_m2_e1*
79.7323
86.0571
74.2735
80.0613
2771944912739894902194
23.1191
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
73.1099
94.8597
59.4736
81.1920
13822749139659516255
2.6797
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
73.1099
94.8597
59.4736
81.1920
13822749139659516255
2.6797
ciseli-customSNPtv*homalt
98.4608
99.4400
97.5007
22.4395
375011211237361095773591
37.4961
gduggal-snapvardSNPtv*het
98.6977
99.0250
98.3726
31.6253
585935576958336696511423
14.7446
gduggal-snapfbSNP*HG002compoundhet*
83.3987
98.0094
72.5790
48.5976
25308514255799664581
6.0120
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.0196
90.4177
61.2365
38.8818
60396401530396878838
91.2357
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
35.1364
94.5160
21.5792
83.2603
256814926709703190
1.9582
anovak-vgINDELD1_5*het
92.1131
94.4127
89.9228
55.4448
8268148938677197246623
68.1098
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
62.4312
62.4952
62.3673
38.8416
1141168481616097518900
91.2727
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.2553
98.3091
76.8345
75.3229
326745623251198029224
94.1032
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
84.3407
95.6876
75.3996
74.3623
298001343300929818643
6.5492
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
84.3407
95.6876
75.3996
74.3623
298001343300929818643
6.5492
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.9251
78.3877
83.6323
72.4014
50506139255017198199240
94.1033
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
56.4553
51.6684
62.2197
60.5704
16228151801620798419672
98.2827
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
56.4553
51.6684
62.2197
60.5704
16228151801620798419672
98.2827
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
72.2252
97.0052
57.5294
65.0968
133454121337598749432
95.5236
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
72.2252
97.0052
57.5294
65.0968
133454121337598749432
95.5236
gduggal-snapvardSNPtv**
98.9298
98.8902
98.9694
27.3396
9589361076295395999341577
15.8748
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.3810
94.8490
75.9939
75.6668
3152417123155899699887
99.1775
gduggal-snapvardINDELI6_15*het
64.9859
82.1571
53.7516
42.4853
824217901159199737974
79.9559
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4365
97.1073
54.0383
40.3757
81242421174999939948
99.5497
anovak-vgSNPtimap_l100_m1_e0het
80.6718
90.3580
72.8613
71.8309
2705528872684599992187
21.8722
gduggal-snapfbINDELI1_5**
94.6996
95.8769
93.5508
58.0186
1444526212145507100313046
30.3659
ciseli-customSNPtiHG002complexvarhet
96.3296
95.9112
96.7516
18.3708
3018961287029942210053353
3.5114
anovak-vgSNPtimap_l100_m1_e0*
84.3963
88.5106
80.6475
68.7475
42424550742052100912274
22.5349
anovak-vgSNPtimap_l100_m2_e0het
80.8461
90.4056
73.1149
73.2980
27684293827470101012208
21.8592
gduggal-snapvardINDELI6_15**
50.7754
45.6827
57.1459
41.2412
113381348113483101118109
80.1998