PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85551-85600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I6_15 | * | * | 60.2022 | 55.3881 | 65.9327 | 50.0878 | 13749 | 11074 | 13685 | 7071 | 6805 | 96.2382 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 72.5851 | 97.6063 | 57.7747 | 75.1406 | 9460 | 232 | 9679 | 7074 | 284 | 4.0147 | |
| ciseli-custom | SNP | ti | map_siren | * | 90.7989 | 89.0429 | 92.6255 | 57.4504 | 89359 | 10996 | 89077 | 7092 | 2003 | 28.2431 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 36.2353 | 32.7562 | 40.5412 | 52.4633 | 4843 | 9942 | 4839 | 7097 | 7056 | 99.4223 | |
| gduggal-bwavard | SNP | ti | * | * | 99.3434 | 99.0343 | 99.6545 | 21.4644 | 2065379 | 20139 | 2057255 | 7133 | 2188 | 30.6743 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 39.0121 | 35.9892 | 42.5893 | 55.2279 | 5321 | 9464 | 5316 | 7166 | 7112 | 99.2464 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 61.3754 | 57.2372 | 66.1586 | 39.2942 | 14046 | 10494 | 14021 | 7172 | 7085 | 98.7869 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 58.4872 | 85.5667 | 44.4273 | 41.2283 | 5715 | 964 | 5748 | 7190 | 7163 | 99.6245 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 48.9065 | 45.5178 | 52.8403 | 57.9746 | 8043 | 9627 | 8074 | 7206 | 5882 | 81.6264 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 48.9065 | 45.5178 | 52.8403 | 57.9746 | 8043 | 9627 | 8074 | 7206 | 5882 | 81.6264 | |
| jlack-gatk | SNP | tv | * | het | 99.3606 | 99.9332 | 98.7945 | 31.3268 | 591301 | 395 | 591230 | 7214 | 153 | 2.1209 | |
| jlack-gatk | SNP | tv | * | * | 99.5956 | 99.9388 | 99.2547 | 27.4223 | 969097 | 593 | 969008 | 7276 | 194 | 2.6663 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 53.3229 | 48.2739 | 59.5513 | 59.8591 | 7761 | 8316 | 10724 | 7284 | 5656 | 77.6496 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 53.3229 | 48.2739 | 59.5513 | 59.8591 | 7761 | 8316 | 10724 | 7284 | 5656 | 77.6496 | |
| ciseli-custom | INDEL | * | HG002complexvar | homalt | 81.7869 | 88.0268 | 76.3731 | 56.3608 | 23791 | 3236 | 23555 | 7287 | 5323 | 73.0479 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.5479 | 97.2152 | 47.2013 | 46.3823 | 6493 | 186 | 6527 | 7301 | 7199 | 98.6029 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 65.4735 | 66.2226 | 64.7412 | 60.6352 | 12030 | 6136 | 13472 | 7337 | 6068 | 82.7041 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 65.4735 | 66.2226 | 64.7412 | 60.6352 | 12030 | 6136 | 13472 | 7337 | 6068 | 82.7041 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.1515 | 85.9467 | 88.3906 | 61.9558 | 56167 | 9184 | 55976 | 7352 | 7082 | 96.3275 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.1515 | 85.9467 | 88.3906 | 61.9558 | 56167 | 9184 | 55976 | 7352 | 7082 | 96.3275 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.5017 | 92.8720 | 80.9492 | 77.3758 | 30866 | 2369 | 31282 | 7362 | 3006 | 40.8313 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 62.9779 | 59.7881 | 66.5273 | 42.2033 | 14672 | 9868 | 14642 | 7367 | 7111 | 96.5250 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 43.8569 | 39.4929 | 49.3052 | 41.4961 | 7211 | 11048 | 7203 | 7406 | 7360 | 99.3789 | |
| qzeng-custom | SNP | * | * | * | 99.4966 | 99.2413 | 99.7533 | 22.5407 | 3031458 | 23176 | 3012983 | 7452 | 1530 | 20.5314 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 56.8616 | 54.1076 | 59.9109 | 50.1524 | 11144 | 9452 | 11168 | 7473 | 5485 | 73.3976 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | het | 97.5069 | 96.6621 | 98.3666 | 21.6545 | 449959 | 15538 | 450835 | 7486 | 872 | 11.6484 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 87.6693 | 98.8054 | 78.7892 | 66.3228 | 27625 | 334 | 27904 | 7512 | 326 | 4.3397 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 47.3208 | 43.7811 | 51.4831 | 46.1266 | 7994 | 10265 | 7984 | 7524 | 7396 | 98.2988 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 50.1585 | 49.1836 | 51.1729 | 59.7079 | 7892 | 8154 | 7919 | 7556 | 5150 | 68.1578 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 66.3810 | 65.0448 | 67.7731 | 41.7349 | 15962 | 8578 | 15905 | 7563 | 5364 | 70.9242 | |
| ghariani-varprowl | SNP | * | HG002complexvar | * | 99.3539 | 99.7064 | 99.0038 | 22.0629 | 752159 | 2215 | 752549 | 7572 | 1579 | 20.8531 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 60.3422 | 54.4854 | 67.6098 | 69.0550 | 12123 | 10127 | 15818 | 7578 | 3735 | 49.2874 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | het | 70.6222 | 82.9664 | 61.4755 | 58.2800 | 1432 | 294 | 12099 | 7582 | 5798 | 76.4706 | |
| anovak-vg | SNP | ti | HG002complexvar | * | 97.6154 | 96.7854 | 98.4597 | 17.8294 | 492093 | 16344 | 484655 | 7582 | 6075 | 80.1240 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | * | 84.9995 | 81.6845 | 88.5950 | 70.0712 | 59142 | 13261 | 58960 | 7590 | 2012 | 26.5086 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 46.1868 | 42.3753 | 50.7516 | 72.8442 | 6194 | 8423 | 7833 | 7601 | 1738 | 22.8654 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | het | 24.1644 | 34.9047 | 18.4785 | 71.1703 | 1429 | 2665 | 1727 | 7619 | 2083 | 27.3395 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | * | 63.8171 | 65.9528 | 61.8155 | 58.2289 | 8068 | 4165 | 12360 | 7635 | 5847 | 76.5815 | |
| ciseli-custom | SNP | tv | HG002complexvar | homalt | 95.4763 | 98.8182 | 92.3530 | 24.8215 | 93987 | 1124 | 92583 | 7666 | 2593 | 33.8247 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 53.9976 | 85.3746 | 39.4857 | 56.3279 | 4991 | 855 | 5021 | 7695 | 7654 | 99.4672 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 53.9976 | 85.3746 | 39.4857 | 56.3279 | 4991 | 855 | 5021 | 7695 | 7654 | 99.4672 | |
| gduggal-bwaplat | SNP | * | HG002complexvar | * | 97.7797 | 96.6309 | 98.9561 | 21.4247 | 728965 | 25416 | 729516 | 7696 | 1060 | 13.7734 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.5884 | 91.6329 | 91.5440 | 60.2311 | 59883 | 5468 | 83381 | 7702 | 4718 | 61.2568 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | * | 85.1771 | 81.9318 | 88.6900 | 71.8362 | 60600 | 13364 | 60413 | 7704 | 2033 | 26.3889 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 58.7698 | 96.5789 | 42.2354 | 60.5712 | 5646 | 200 | 5638 | 7711 | 7534 | 97.7046 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 58.7698 | 96.5789 | 42.2354 | 60.5712 | 5646 | 200 | 5638 | 7711 | 7534 | 97.7046 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 44.4394 | 41.1352 | 48.3208 | 59.7393 | 7269 | 10402 | 7223 | 7725 | 7546 | 97.6828 | |