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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
85501-85550 / 86044 show all
ciseli-customINDELI1_5*homalt
89.1001
89.2384
88.9622
46.9528
5392565035367866606265
94.0691
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
48.6618
55.8168
43.1327
62.9167
22551785505366624317
64.8004
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
52.1766
96.2264
35.7920
50.1344
3723146371766686640
99.5801
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
37.1023
33.8847
40.9951
49.8226
46719114463966776648
99.5657
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
57.3405
87.8864
42.5514
59.2810
4919678495066836644
99.4164
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
66.4593
77.1439
58.3743
42.1879
64771919937266835135
76.8367
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.5774
33.9720
44.6273
63.2598
34226651539566944337
64.7894
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
61.3598
97.0699
44.8576
61.9828
5433164546567186663
99.1813
gduggal-snapfbSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.6868
98.6611
72.6589
66.9839
17612239178696724214
3.1826
mlin-fermikitINDEL*HG002compoundhethet
43.9232
77.6258
30.6263
58.8856
3178916298367576682
98.8900
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
60.5216
54.3406
68.2890
64.1858
1119294041456467633696
54.6503
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.4171
52.9438
60.3781
34.2544
966785921031567695257
77.6629
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
71.5972
91.9862
58.6068
39.8738
9573834960867866745
99.3958
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
72.5476
77.2827
68.3592
65.9014
1377140481466167863680
54.2293
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.8416
83.8718
32.4948
49.6168
3245624326867896766
99.6612
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
55.2412
96.6262
38.6762
52.9026
4296150428367916733
99.1459
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.8104
37.5245
44.7270
52.3629
55489237550568036744
99.1327
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50*
63.5899
54.1867
76.9418
62.7693
19828167642272468102991
43.9207
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
54.3229
97.9257
37.5868
83.5805
4060864112682899
1.4499
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
63.5123
94.3255
47.8735
39.2649
6300379628168396729
98.3916
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
48.8008
44.4493
54.0968
38.3719
811610143806868466736
98.3932
gduggal-bwavardINDEL*HG002complexvarhet
91.7227
97.3578
86.7042
60.1106
4499112214467068505497
80.2482
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
51.3899
95.4252
35.1633
52.7695
3692177371568506821
99.5766
gduggal-snapvardSNP*HG002complexvar*
97.8941
96.7741
99.0404
21.0357
7300482433670836268632537
36.9663
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
88.6605
87.9344
89.3987
86.9048
5746678855798468766009
87.3909
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
88.6605
87.9344
89.3987
86.9048
5746678855798468766009
87.3909
gduggal-snapvardINDELD6_15*het
75.6496
85.7660
67.6679
49.6050
994216501441868895530
80.2729
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
50.1118
85.0427
35.5215
51.6283
3781665380469056879
99.6235
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
88.6086
87.8487
89.3817
86.9060
5741079415814169075920
85.7101
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
88.6086
87.8487
89.3817
86.9060
5741079415814169075920
85.7101
gduggal-bwavardSNPti*het
99.2556
99.0550
99.4571
24.6552
126978312114126578969102002
28.9725
jmaeng-gatkSNP**het
99.6262
99.6225
99.6299
27.1537
1866514707318663916934179
2.5815
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
44.0104
40.4063
48.3203
59.8954
64849563648769386879
99.1496
gduggal-bwavardINDEL*HG002complexvar*
90.6853
90.5690
90.8018
55.4471
6968272566862869525563
80.0201
gduggal-snapplatINDEL*HG002complexvarhet
73.0648
65.5393
82.5428
64.5149
3028715925329426967459
6.5882
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
54.4494
95.7490
38.0411
54.7898
4257189428069716935
99.4836
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
74.0005
97.9533
59.4604
43.3923
101942131022669726772
97.1314
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
32.4738
29.1984
36.5769
50.5553
40259760402269746937
99.4695
ciseli-customINDEL*HG002compoundhethet
30.5417
31.9071
29.2883
74.6335
13052785288969754438
63.6272
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
46.6247
43.6219
50.0715
62.1939
70009047700369836898
98.7828
anovak-vgINDEL*HG002compoundhethomalt
34.7177
86.4431
21.7206
63.7894
59393193969885562
79.5936
gduggal-snapplatSNPtiHG002complexvar*
98.2167
97.8257
98.6108
20.9389
4973821105549779970131203
17.1539
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
78.3192
73.5341
83.7704
54.2583
31866114693629170313645
51.8418
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
35.3630
32.4556
38.8425
53.3428
44749311447070386992
99.3464
jmaeng-gatkSNP***
99.6144
99.4608
99.7686
23.7289
30381471647230380017046253
3.5907
gduggal-bwavardINDELI6_15*het
71.5920
95.0364
57.4257
53.1216
9535498951270526790
96.2847
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.3548
95.3881
66.4830
78.8960
13899672139987057339
4.8037
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.3548
95.3881
66.4830
78.8960
13899672139987057339
4.8037
gduggal-snapfbINDELI1_5*het
94.5346
97.1091
92.0931
57.7460
7675622858232270681603
22.6797
gduggal-snapvardINDELD6_15**
65.0191
61.1567
69.4022
48.8917
15957101351603470695706
80.7186