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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
85251-85300 / 86044 show all
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
55.3475
87.7323
40.4253
50.7774
3304462328948474536
93.5837
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
55.3475
87.7323
40.4253
50.7774
3304462328948474536
93.5837
gduggal-snapvardSNP*map_l100_m2_e0het
93.3360
96.7693
90.1379
78.6381
449001499443194849371
7.6511
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
73.9195
72.9786
74.8850
67.4004
1449553671448548584633
95.3685
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
59.1721
54.4401
64.8052
53.7673
87367311894748594228
87.0138
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
86.7164
95.8976
79.1397
59.1322
170887311843448594632
95.3283
gduggal-bwavardINDELI6_15HG002compoundhethet
6.3867
74.0385
3.3373
37.4814
1545416848664788
98.3970
gduggal-bwavardINDELI6_15HG002compoundhet*
2.5796
2.0283
3.5425
37.8475
178859817948744796
98.3997
gduggal-snapvardSNP*map_l100_m2_e1het
93.3754
96.7973
90.1872
78.6618
453961502448054875376
7.7128
gduggal-snapvardSNP*map_l100_m1_e0*
94.9349
96.5402
93.3822
73.4477
698982505689174884410
8.3948
gduggal-snapplatINDELI1_5HG002complexvar*
77.0714
71.7352
83.2654
65.6966
239339430243014884375
7.6781
gduggal-snapvardSNP*map_l100_m2_e0*
95.0024
96.5659
93.4887
74.9387
714242540704264905414
8.4404
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.8643
91.4147
84.5794
78.5110
2624724652690349051242
25.3211
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.8643
91.4147
84.5794
78.5110
2624724652690349051242
25.3211
gduggal-snapfbSNPtiHG002compoundhethet
78.4798
97.2856
65.7667
46.9249
924725894274907174
3.5460
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
84.4168
96.1004
75.2662
52.8425
140475701498449244785
97.1771
gduggal-snapvardSNP*map_l100_m2_e1*
95.0240
96.5773
93.5198
74.9627
721792558711624931419
8.4973
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
91.3695
99.3801
84.5540
81.4321
28534178270264937134
2.7142
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
91.3695
99.3801
84.5540
81.4321
28534178270264937134
2.7142
jlack-gatkSNP*map_sirenhet
97.0812
99.4593
94.8142
68.9379
90499492904854949324
6.5468
jlack-gatkINDEL***
98.6899
98.8138
98.5664
60.1151
340455408734033249502708
54.7071
gduggal-snapfbSNPtvHG002complexvar*
98.7938
99.5787
98.0211
25.3464
24511810372454404955529
10.6761
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.3917
97.6114
95.2022
68.9543
4711811539853949662712
54.6114
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.7027
35.8682
42.0236
64.3849
36136460360149684896
98.5507
jlack-gatkSNP*map_siren*
98.0143
99.3920
96.6743
64.0744
1453398891453164999358
7.1614
egarrison-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.1721
98.0713
90.5711
70.5632
473409314830750294714
93.7363
gduggal-bwavardSNPtv*het
99.1377
99.1291
99.1462
30.0519
586551515358408950301454
28.9066
eyeh-varpipeINDELD1_5**
95.6258
94.7617
96.5059
56.5047
139058768713903850344747
94.2988
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
56.3707
87.9455
41.4787
65.8135
3553487356850344915
97.6361
gduggal-bwafbSNPti*het
99.7363
99.8649
99.6080
22.2231
1280165173212802845038382
7.5824
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
69.0793
87.2712
57.1635
56.5737
2146313673550474364
86.4672
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.9422
91.6371
84.5336
63.1509
2793125492759650494851
96.0784
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.9422
91.6371
84.5336
63.1509
2793125492759650494851
96.0784
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
86.2517
96.2231
78.1528
59.6097
171466731808350554861
96.1622
gduggal-snapvardINDELD1_5HG002complexvar*
89.5567
91.9115
87.3195
53.8184
3006726463483050583634
71.8466
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
60.1668
61.4104
58.9725
57.4072
51643245728950714386
86.4918
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.8037
98.1533
89.8233
81.9505
44858844449975098525
10.2982
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.8037
98.1533
89.8233
81.9505
44858844449975098525
10.2982
jpowers-varprowlINDELI1_5HG002compoundhethet
20.5402
73.6471
11.9344
70.4320
62622469150995074
99.5097
gduggal-snapfbINDEL*HG002complexvar*
90.4920
87.9994
93.1300
55.3026
6770592336929851122371
46.3811
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
35.0458
95.2883
21.4714
85.0675
1355671398511385
1.6624
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
70.2572
87.5000
58.6914
56.3300
73151045726651144566
89.2843
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
70.2572
87.5000
58.6914
56.3300
73151045726651144566
89.2843
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
37.4948
41.7896
34.0005
84.4865
255035522650514458
1.1275
mlin-fermikitSNP*HG002complexvarhomalt
98.3225
98.4247
98.2205
20.7847
284029454628404351464990
96.9685
ciseli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
45.1864
43.7705
46.6970
66.0012
44095664451751563623
70.2676
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
75.4653
90.5356
64.6962
41.2162
1234129945651604823
93.4690
gduggal-bwavardSNPtv**
99.2324
99.0032
99.4627
26.1679
960032966695530951611540
29.8392
gduggal-bwaplatSNPtiHG002complexvarhet
97.7064
97.0801
98.3410
19.6959
30557591913061615165589
11.4037
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
43.5285
42.1324
45.0202
75.7921
42445829423151675021
97.1744