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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
84801-84850 / 86044 show all
ghariani-varprowlSNPtvHG002complexvarhet
98.7696
99.5137
98.0366
26.9661
149998733150145300754
1.7958
mlin-fermikitSNP*map_l125_m1_e0homalt
65.3755
57.2079
76.2637
52.9793
96717234967130102851
94.7176
gduggal-bwavardSNP*HG002compoundhethet
83.4515
85.5762
81.4296
49.6147
1213320451320330112546
84.5566
anovak-vgINDELI1_5HG002compoundhethomalt
40.4620
88.4498
26.2307
64.1465
29138107130122451
81.3745
jpowers-varprowlSNP*HG002compoundhet*
90.5976
92.3941
88.8696
48.7204
2385819642405730132048
67.9721
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
80.7791
74.7144
87.9154
43.6787
1092136962195630181053
34.8907
gduggal-bwaplatINDEL***
92.6621
87.0843
99.0034
65.2816
3000424450029991730191851
61.3117
gduggal-snapfbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
83.6015
87.3211
80.1860
72.6837
136021975122463026728
24.0582
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
72.8639
81.3378
65.9890
43.5053
2663611587530282874
94.9141
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
60.5607
55.5947
66.5009
43.6531
61614921601930322878
94.9208
ciseli-customINDELI6_15HG002compoundhet*
2.2462
1.5497
4.0797
35.3639
136864012930332934
96.7359
ciseli-customINDELD1_5HG002complexvarhet
87.0231
88.2917
85.7906
58.0288
183322431183183034650
21.4239
gduggal-bwavardSNP*HG002compoundhet*
84.7137
82.2128
87.3715
45.7405
2122945932099130342565
84.5419
anovak-vgINDELD1_5*homalt
93.1579
92.5438
93.7802
58.8390
4527836484576130352387
78.6491
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
33.9862
95.3401
20.6789
83.3507
75737792303837
1.2179
ghariani-varprowlSNPtiHG002compoundhet*
88.8369
93.7235
84.4347
48.3203
163811097164963041899
29.5626
gduggal-snapvardINDELI1_5HG002complexvarhet
90.2347
95.7007
85.3594
58.5913
174077821773030412197
72.2460
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
63.4692
61.7158
65.3251
67.3472
41222557574630501349
44.2295
ckim-dragenINDEL***
99.1359
99.1574
99.1143
60.3466
341639290334130330502010
65.9016
mlin-fermikitSNP*map_l125_m2_e0homalt
66.1120
58.0777
76.7260
57.2932
1009172841009130612900
94.7403
ckim-isaacINDEL*HG002compoundhethet
56.9247
80.6302
43.9912
64.9439
3301793240530622738
89.4187
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
79.6648
84.2067
75.5878
57.5613
93521754948430631008
32.9089
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
58.8351
54.0163
64.5980
47.2721
45193847560030692397
78.1036
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
14.5031
86.9565
7.9113
76.9878
24036264307336
1.1715
jlack-gatkSNP*map_l125_m1_e0het
94.3869
99.0455
90.1469
82.7150
28121271281153073220
7.1591
ckim-dragenSNPtv*het
99.7113
99.9417
99.4820
27.9772
5913513455915443080126
4.0909
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.7416
67.9902
54.8896
38.6127
22261048375530862432
78.8075
mlin-fermikitSNP*map_l125_m2_e1homalt
66.2819
58.2991
76.7977
57.4167
1022173111022130882926
94.7539
ckim-gatkSNPti*het
99.7182
99.6780
99.7585
24.7182
1277763412812777133093133
4.3000
ghariani-varprowlINDEL**homalt
92.0100
87.3111
97.2434
45.5820
1092891588310918330952195
70.9208
gduggal-snapvardINDELI1_5HG002complexvar*
89.7354
89.2273
90.2494
52.3644
2976835942866530972248
72.5864
jlack-gatkSNP*map_l125_m1_e0*
96.1255
98.8638
93.5349
78.9418
44812515448063097238
7.6849
gduggal-snapfbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
54.4986
47.4734
63.9642
60.7084
47825291549930981349
43.5442
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
51.0479
89.1961
35.7556
37.7138
1742211173231122889
92.8342
jlack-gatkSNP*map_l125_m2_e0het
94.4864
99.0654
90.3119
83.7916
29044274290383115221
7.0947
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.8642
98.5648
91.4314
69.9321
327594773326031172975
95.4443
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
89.1434
91.8292
86.6102
71.1229
32482892016231173094
99.2621
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
77.1843
73.4104
81.3673
37.5411
1340448551361631183097
99.3265
jlack-gatkSNP*map_l125_m2_e1het
94.5222
99.0756
90.3690
83.8291
29366274293603129222
7.0949
ckim-dragenSNPtv**
99.8136
99.9495
99.6782
25.0811
9692004909694993130164
5.2396
asubramanian-gatkSNP***
98.9379
97.9985
99.8954
21.0150
29934806113929933433133150
4.7877
jlack-gatkSNP*map_l125_m2_e0*
96.1886
98.8828
93.6372
80.3034
46201522461953139239
7.6139
gduggal-snapfbINDELI1_5HG002compoundhet*
77.3920
77.8731
76.9169
63.1671
962227341047331431735
55.2020
qzeng-customINDELD6_15**
90.6408
92.3501
88.9936
51.4321
2409619962541331431242
39.5164
cchapple-customSNPtv*het
99.6701
99.8702
99.4708
26.9512
5909287685915533147233
7.4039
ckim-gatkSNPti**
99.6817
99.5154
99.8485
21.6609
20754041010720753453148170
5.4003
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
82.1732
97.9957
70.7498
40.7293
7236148762431523088
97.9695
jlack-gatkSNP*map_l125_m2_e1*
96.2112
98.8920
93.6720
80.3444
46679523466733153240
7.6118
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
61.4979
50.4415
78.7620
33.7498
348534241169331533094
98.1288
eyeh-varpipeINDELI1_5HG002compoundhethomalt
14.0848
94.2249
7.6112
66.1111
3101926031563150
99.8099