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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
84001-84050 / 86044 show all
jlack-gatkSNPtimap_l125_m2_e0het
95.3314
99.0570
91.8760
83.3511
18698178186941653140
8.4695
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.8526
95.8946
79.3688
62.7255
5606240636316541576
95.2842
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.8526
95.8946
79.3688
62.7255
5606240636316541576
95.2842
anovak-vgSNPtimap_l250_m1_e0*
74.8997
81.6117
69.2079
91.2986
373784237221656368
22.2222
qzeng-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
92.1962
96.6768
88.1125
56.1680
5411186122821657662
39.9517
gduggal-bwafbINDELI1_5**
97.8814
96.8991
98.8838
56.3942
145992467214678916571400
84.4900
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.9003
95.1929
90.7155
79.9240
16159816161901657193
11.6476
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.9003
95.1929
90.7155
79.9240
16159816161901657193
11.6476
ghariani-varprowlSNP*map_l100_m2_e1het
97.8415
99.1599
96.5577
75.0527
46504394465071658256
15.4403
jlack-gatkSNPtimap_l125_m2_e1het
95.3643
99.0674
91.9280
83.3869
18909178189051660140
8.4337
jmaeng-gatkSNP*map_sirenhet
95.7096
93.4477
98.0837
71.4678
850295962850151661101
6.0807
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
54.1237
72.0257
43.3492
26.9375
22487127116611654
99.5786
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
15.1782
85.4545
8.3287
79.8084
14124151166221
1.2635
gduggal-snapfbSNP*HG002complexvarhomalt
99.5552
99.6857
99.4250
21.2913
2876689072877331664399
23.9784
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
36.5445
33.8941
39.6445
65.7686
10882122109316641651
99.2188
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
66.6372
86.2331
54.2983
88.7662
20423261977166492
5.5289
jlack-gatkSNPtimap_l125_m2_e0*
96.7576
98.8796
94.7247
79.7203
29919339299151666151
9.0636
ciseli-customSNPtvmap_l150_m1_e0*
76.2235
70.9861
82.2954
80.7468
7746316677441666387
23.2293
ghariani-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50*
90.8942
97.5031
85.1244
74.2945
945024295451668246
14.7482
ghariani-varprowlSNP*map_l100_m1_e0*
98.3728
99.0277
97.7266
70.1377
71699704717021668318
19.0647
mlin-fermikitSNPtvmap_l100_m1_e0homalt
71.5194
65.9516
78.1139
49.8226
59643079596416711585
94.8534
eyeh-varpipeINDELI1_5*het
97.6534
97.4342
97.8735
52.4121
7701320287690916711507
90.1855
eyeh-varpipeSNP*map_l100_m1_e0*
98.6894
99.7348
97.6657
67.8112
7221119269996167351
3.0484
jlack-gatkSNPtimap_l125_m2_e1*
96.7790
98.8910
94.7553
79.7616
30230339302261673151
9.0257
anovak-vgINDELI16_PLUS**
32.9342
25.0588
48.0286
39.2493
15984779154716741112
66.4277
gduggal-snapvardINDEL**homalt
86.7363
77.5779
98.3465
41.7135
97105280669962416751571
93.7910
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
67.9552
65.9379
70.1000
59.0467
40112072392716751645
98.2090
qzeng-customINDELI6_15*het
91.4351
95.6444
87.5806
52.1449
9596437118121675583
34.8060
ndellapenna-hhgaINDELD6_15*het
92.4134
97.5414
87.7976
56.6240
113072851205916761576
94.0334
gduggal-snapfbSNP*map_l100_m1_e0het
97.2532
98.1503
96.3723
66.8525
44520839445241676659
39.3198
eyeh-varpipeSNP*map_l100_m2_e0het
97.9986
99.6659
96.3860
71.4860
4624415544753167834
2.0262
ciseli-customSNP*map_l250_m1_e0*
68.5054
64.2204
73.4031
91.7933
4638258446311678322
19.1895
mlin-fermikitSNPtvmap_l100_m2_e0homalt
72.0127
66.5183
78.4964
53.5791
61293085612916791592
94.8183
jmaeng-gatkSNP*map_siren*
94.0415
89.7742
98.7347
67.2383
131275149531312521682121
7.1938
mlin-fermikitINDELD6_15*het
90.4589
94.5825
86.6799
51.7766
109646281095216831653
98.2175
ciseli-customSNP*map_l125_m1_e0homalt
88.0175
86.4537
89.6388
65.9316
1461522901456916841350
80.1663
mlin-fermikitSNPtvmap_l100_m2_e1homalt
72.1476
66.6523
78.6303
53.6694
62003102620016851598
94.8368
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
77.8582
76.3275
79.4516
54.8804
46431440651916861004
59.5492
ndellapenna-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.5223
75.9394
87.9912
60.0478
1218638611236116871429
84.7066
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.2413
93.5539
90.9650
64.4972
1699511711699516881649
97.6896
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.2413
93.5539
90.9650
64.4972
1699511711699516881649
97.6896
eyeh-varpipeSNP*map_l100_m2_e1het
98.0064
99.6695
96.3978
71.5205
4674315545226169034
2.0118
jpowers-varprowlINDELI1_5HG002complexvar*
92.7158
90.8192
94.6934
52.3150
3030030633017516911600
94.6186
gduggal-snapfbSNP*map_l100_m2_e0het
97.2954
98.1875
96.4194
69.0247
45558841455621692659
38.9480
gduggal-snapfbSNP*map_l100_m2_e1het
97.3145
98.2025
96.4425
69.0883
46055843460591699659
38.7875
eyeh-varpipeSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.3253
99.6076
95.1454
61.7302
35280139333181700145
8.5294
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
79.3428
82.9101
76.0698
72.6664
5322109754041700930
54.7059
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
79.3428
82.9101
76.0698
72.6664
5322109754041700930
54.7059
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.5434
96.4420
78.4876
62.7159
5638208621717041642
96.3615
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.5434
96.4420
78.4876
62.7159
5638208621717041642
96.3615