PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
83701-83750 / 86044 show all
gduggal-bwavardSNP*map_l250_m2_e0*
90.6036
97.5016
84.6171
92.0596
76881977613138444
3.1792
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.8238
95.1411
88.7300
60.2423
109265581092013871378
99.3511
mlin-fermikitINDEL*HG002complexvarhet
95.8810
94.8801
96.9032
52.4432
4384623664340113871299
93.6554
jli-customSNPtv**
99.9049
99.9528
99.8570
21.1774
969232458969166138883
5.9798
mlin-fermikitSNPtvmap_l125_m2_e0*
62.7919
49.6210
85.4813
62.5997
81828307817813891218
87.6890
gduggal-snapplatSNP*map_l150_m2_e1*
92.7947
90.2887
95.4437
85.1006
290823128290961389765
55.0756
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_triTR_11to50het
83.0702
98.1137
72.0266
52.1291
358969357913901276
91.7986
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
59.8779
85.1773
46.1658
67.0074
1201209119213901248
89.7842
gduggal-snapvardSNPtimap_l150_m0_e0*
89.0696
94.6444
84.1150
85.4263
744042173711392107
7.6868
gduggal-snapvardINDEL*map_siren*
85.9947
88.0027
84.0764
84.1625
652188973551393670
48.0976
gduggal-bwavardSNP*map_l250_m2_e1*
90.6461
97.4959
84.6957
92.1274
77872007709139345
3.2304
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
51.0900
47.6832
55.0210
72.0588
16981863170413931371
98.4207
ckim-vqsrINDEL*HG002compoundhet*
93.9622
92.7503
95.2061
62.6940
2778821722766513931381
99.1385
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_triTR_11to50*
53.7099
42.3437
73.4172
63.2026
2851388238501394367
26.3271
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_triTR_11to50*
77.5159
76.4592
78.6021
48.9675
51481585512813961280
91.6905
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
42.8527
36.9227
51.0519
66.2725
14712513145613961253
89.7564
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
gduggal-snapvardINDELC1_5HG002complexvar*
81.4638
100.0000
68.7248
77.2577
7030721398373
26.6810
qzeng-customSNP*HG002complexvar*
99.1204
98.4430
99.8072
19.9398
742639117467238431398631
45.1359
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
48.9137
52.6535
45.6699
40.6819
506455117613991152
82.3445
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
34.3818
27.5134
45.8204
41.0718
10812848118414001153
82.3571
gduggal-snapfbSNP*map_l125_m2_e0het
96.4331
97.5578
95.3341
73.4403
28602716286051400602
43.0000
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50*
94.4932
92.6377
96.4246
45.4241
3389826943775614001310
93.5714
gduggal-bwavardSNPtimap_l150_m1_e0het
93.4529
97.7284
89.5358
84.8427
1208928111996140282
5.8488
mlin-fermikitSNPtvmap_l125_m2_e1*
62.9750
49.8289
85.5434
62.7659
83008357829614021229
87.6605
ckim-gatkINDEL*HG002compoundhet*
93.9895
92.8338
95.1743
62.6651
2781321472769014041391
99.0741
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
79.2084
99.3671
65.8495
73.6859
2669172713140718
1.2793
gduggal-snapfbSNP*map_l125_m2_e1het
96.4602
97.5843
95.3616
73.5220
28924716289271407602
42.7861
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.3731
72.7114
89.8397
50.0523
1166843791244114071388
98.6496
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
89.7127
90.8139
88.6378
45.2529
100641018109841408719
51.0653
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
92.5554
89.9881
95.2735
38.7245
2878932032842214101207
85.6028
jpowers-varprowlINDELD16_PLUSHG002compoundhet*
17.0370
14.9082
19.8751
36.5405
349199235014111404
99.5039
gduggal-bwavardSNPtimap_l150_m2_e0het
93.6309
97.7486
89.8461
85.7790
1259129012494141284
5.9490
gduggal-snapfbINDELI6_15HG002compoundhet*
66.9443
57.2812
80.5291
25.2164
50273749584414131393
98.5846
gduggal-bwavardSNPtimap_l150_m1_e0*
95.2687
97.5497
93.0920
81.8831
1922948319055141491
6.4356
ckim-gatkINDEL**het
99.4669
99.6616
99.2730
62.2737
1934766571930951414578
40.8769
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
34.5038
68.9034
23.0141
48.5298
42119042314151414
99.9293
gduggal-bwavardSNPtvHG002complexvar*
98.2474
97.1213
99.3998
22.3354
23906970862343431415923
65.2297
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.7253
89.2979
77.0540
68.9962
446453547551416413
29.1667
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.7253
89.2979
77.0540
68.9962
446453547551416413
29.1667
jpowers-varprowlSNPtiHG002complexvar*
99.5182
99.3169
99.7203
18.7923
50496134735051191417799
56.3867
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
62.4499
90.8511
47.5768
61.6650
1281129128614171364
96.2597
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
52.6451
49.8736
55.7428
73.7700
17761785178614181371
96.6855
ckim-dragenSNP*map_l100_m1_e0*
98.6742
99.2901
98.0660
67.7530
71889514719001418151
10.6488
astatham-gatkINDEL*HG002compoundhet*
95.0088
94.7931
95.2256
62.9264
2840015602828214181407
99.2243
gduggal-snapvardINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
49.3757
100.0000
32.7807
90.9114
306921419174
12.2622
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.5454
91.9051
95.2453
77.4805
286222521284251419235
16.5610
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.5454
91.9051
95.2453
77.4805
286222521284251419235
16.5610
qzeng-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.1638
96.5250
97.8111
70.9066
6219222396340814191076
75.8280