PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
83501-83550 / 86044 show all
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
25.2937
22.4179
29.0158
55.9542
471163051312551101
87.7291
ciseli-customSNPtvmap_l150_m2_e0het
71.3414
65.0579
78.9685
85.0033
471825344716125650
3.9809
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
85.0816
98.0660
75.1335
65.0221
3803753798125730
2.3866
ciseli-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
60.3870
78.8652
48.9241
68.3622
111229812051258386
30.6836
ciseli-customSNP*map_l150_m1_e0homalt
86.3052
84.4052
88.2927
70.7708
95151758949512591014
80.5401
mlin-fermikitINDELD1_5*homalt
97.9967
98.5488
97.4507
61.3393
482167104812712591234
98.0143
qzeng-customSNP*map_siren*
92.3867
86.6004
99.0016
63.6130
126634195941250471261903
71.6098
bgallagher-sentieonINDEL**homalt
99.4457
99.8937
99.0017
58.7526
12503913312504912611237
98.0967
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
36.1705
94.9861
22.3385
27.7457
3411836312621171
92.7892
eyeh-varpipeSNPtvmap_l100_m2_e1het
96.0176
99.7490
92.5553
72.3251
158984015702126316
1.2668
mlin-fermikitSNPtimap_l150_m2_e1homalt
61.4051
51.5794
75.8555
61.5254
39683725396812631193
94.4576
jpowers-varprowlSNPtvHG002complexvar*
99.3235
99.1623
99.4852
24.4097
24409020622442851264803
63.5285
cchapple-customSNPtvmap_sirenhet
97.1514
98.6228
95.7232
66.6384
28215394282911264181
14.3196
cchapple-customSNPtvmap_siren*
97.8668
98.4651
97.2758
62.3550
45225705452061266183
14.4550
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200het
34.5477
35.3061
33.8212
42.2578
17331764712661039
82.0695
jlack-gatkSNP*map_l150_m0_e0het
91.7997
98.3753
86.0480
89.1426
78111297808126694
7.4250
eyeh-varpipeSNPtvmap_l100_m2_e0*
97.4043
99.7763
95.1424
70.6557
249775624816126721
1.6575
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.6420
95.6229
93.6811
78.6041
18722857187841267139
10.9708
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.6420
95.6229
93.6811
78.6041
18722857187841267139
10.9708
ciseli-customSNPtvmap_l150_m2_e1het
71.5152
65.2695
79.0828
84.9798
479625524794126852
4.1010
gduggal-snapvardSNPtilowcmp_SimpleRepeat_diTR_11to50*
84.7117
92.9088
77.8438
78.8648
44943434455126879
6.2303
gduggal-snapplatINDELD6_15*het
45.6195
33.7388
70.4153
67.7429
3911768130181268180
14.1956
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.6376
97.1213
76.5824
85.4250
41161224150126911
0.8668
gduggal-snapfbSNP*lowcmp_SimpleRepeat_diTR_51to200het
3.0372
74.0741
1.5504
75.3723
2072012704
0.3150
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
38.9071
33.7695
45.8884
60.0034
10842126107712701203
94.7244
gduggal-snapfbSNP*lowcmp_SimpleRepeat_quadTR_51to200het
11.7728
84.3137
6.3282
78.4662
86168612739
0.7070
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200*
23.1444
17.6107
33.7493
43.2911
370173164912741040
81.6327
eyeh-varpipeSNPtvmap_l100_m2_e1*
97.4090
99.7785
95.1495
70.7126
252275625050127721
1.6445
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
93.0148
97.6827
88.7726
47.1861
101172401009712771255
98.2772
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.0244
95.4725
96.5827
67.7509
3618617163612012781242
97.1831
ciseli-customSNPtimap_l150_m0_e0*
76.8096
72.5099
81.6514
84.8420
5700216156961280329
25.7031
ciseli-customSNP*map_l250_m1_e0het
61.9329
56.9506
67.8706
93.2521
270820472706128141
3.2006
mlin-fermikitSNPtvmap_l125_m1_e0homalt
63.9810
57.3208
72.3922
52.9173
33592501335912811204
93.9891
jlack-gatkSNP*map_l150_m0_e0*
93.9698
98.0635
90.2042
86.8496
11799233117961281106
8.2748
ciseli-customSNP*map_l100_m0_e0homalt
87.9778
87.2289
88.7396
61.6447
1013614841010312821041
81.2012
ghariani-varprowlSNPtvmap_siren*
98.2281
99.2140
97.2616
65.3754
45569361455701283183
14.2634
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
72.4338
76.9090
68.4508
62.7083
251875627881285845
65.7588
ciseli-customSNP*map_l150_m2_e0homalt
86.5638
84.7166
88.4932
73.1740
99111788989012861036
80.5599
ghariani-varprowlSNP*map_l125_m2_e0het
97.3365
98.9699
95.7561
79.6531
29016302290161286236
18.3515
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
46.0775
80.1389
32.3344
77.7959
577143615128733
2.5641
hfeng-pmm2SNP***
99.9416
99.9254
99.9579
18.8175
3052339228030522021287114
8.8578
ghariani-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50het
88.8712
96.2797
82.5214
76.5304
60042326081128813
1.0093
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_11to50het
76.7313
74.9840
78.5619
87.2292
4676156047201288113
8.7733
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.2721
93.5191
89.1304
80.4771
10101700105781290640
49.6124
ghariani-varprowlSNP*map_l125_m2_e1het
97.3535
98.9777
95.7818
79.7151
29337303293371292237
18.3437
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
95.0645
96.5066
93.6649
54.5130
1326481911712931186
91.7247
gduggal-bwafbSNP*map_sirenhet
98.9549
99.3230
98.5895
60.8677
90375616903791293200
15.4679
gduggal-bwafbINDELD1_5**
98.5809
98.0538
99.1138
59.5290
14388928561447271294903
69.7836
mlin-fermikitSNPtvmap_l125_m2_e0homalt
64.7739
58.2018
73.0192
57.0520
35022515350212941217
94.0495
jlack-gatkSNPtimap_l150_m1_e0het
94.4532
98.8682
90.4156
85.3425
12230140122261296116
8.9506