PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
83301-83350 / 86044 show all
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
34.4349
24.2003
59.6699
64.4061
16725237166311241036
92.1708
gduggal-snapfbSNP*map_l150_m1_e0*
96.2111
96.1025
96.3199
76.8067
294161193294191124527
46.8861
jpowers-varprowlSNP*map_l100_m2_e0het
97.3254
97.0883
97.5636
74.0402
450481351450501125264
23.4667
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.6659
50.7487
89.1009
66.3976
9219894791971125989
87.9111
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.6659
50.7487
89.1009
66.3976
9219894791971125989
87.9111
jli-customSNPti*het
99.9331
99.9539
99.9123
17.4772
12813005911281266112587
7.7333
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
68.5238
70.7333
66.4482
68.8856
212287822301126242
21.4920
asubramanian-gatkSNPtv*het
98.8211
97.8557
99.8057
26.7081
57900812688578944112742
3.7267
jmaeng-gatkSNP*map_l100_m2_e0het
92.2826
87.7562
97.3014
82.8537
40718568140707112970
6.2002
ciseli-customSNPtimap_l125_m2_e1homalt
88.7321
87.6244
89.8682
67.8893
100401418100231130915
80.9735
ciseli-customSNPtimap_l250_m2_e1*
70.8062
67.0213
75.0441
92.1332
3402167434011131218
19.2750
cchapple-customSNP*map_l150_m2_e1het
95.7763
96.9945
94.5883
81.9692
19751612197681131246
21.7507
anovak-vgINDELD16_PLUS**
64.9199
56.1321
76.9701
52.6377
3808297637801131815
72.0601
cchapple-customSNP*map_l150_m2_e1*
96.6680
96.8395
96.4971
78.8652
311921018311841132247
21.8198
ciseli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
43.0574
79.0698
29.5836
47.9961
47612647611331076
94.9691
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
26.2261
75.3623
15.8754
79.0455
20868214113422
1.9400
gduggal-snapvardSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
75.9223
95.2075
63.1339
85.1688
1927971942113422
1.9400
mlin-fermikitSNPtvmap_l100_m0_e0*
58.6013
45.6875
81.6920
55.0247
50646020506011341011
89.1534
jpowers-varprowlSNP*map_l100_m2_e1het
97.3347
97.1001
97.5704
74.0696
455381360455401134265
23.3686
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
53.5889
45.7759
64.6178
56.5306
997118120711134332
29.2769
anovak-vgINDELD6_15*homalt
75.9353
71.8780
80.4782
54.2097
4547177946791135811
71.4537
jlack-gatkSNPtvmap_l150_m1_e0*
94.3885
98.6712
90.4622
83.2378
1076714510765113567
5.9031
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
94.4069
93.3537
95.4842
40.6110
229091631240201136871
76.6725
anovak-vgINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
68.7372
91.6432
54.9921
52.9543
97689138811361069
94.1021
jmaeng-gatkSNP*map_l100_m2_e1het
92.3544
87.8737
97.3167
82.8441
41211568741200113670
6.1620
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
88.7788
99.0616
80.4299
50.4389
4645444677113826
2.2847
gduggal-snapfbSNP*map_l150_m2_e0*
96.3250
96.2326
96.4176
78.3427
306521200306551139529
46.4442
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.1553
96.5499
82.8127
57.5437
5485196548811391055
92.6251
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50*
96.5798
99.2191
94.0773
54.5022
18041142180921139144
12.6427
jmaeng-gatkSNP*map_l100_m2_e0*
89.4136
82.0994
98.1585
79.7900
607241324060713113979
6.9359
gduggal-snapvardINDELD6_15HG002complexvarhet
73.6293
75.8333
71.5498
53.1509
236675428671140832
72.9825
gduggal-bwavardINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
68.8039
91.6288
55.0827
70.2532
1412129139811401083
95.0000
qzeng-customINDELI6_15HG002compoundhet*
75.9258
69.2571
84.0157
36.6439
6078269859921140884
77.5439
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.9862
97.5782
92.5283
63.5798
142633541413011411110
97.2831
gduggal-bwavardINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
42.2458
32.6120
59.9579
69.4254
17333581171011421085
95.0088
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9919
97.7475
98.2375
67.0385
6387914726365211421030
90.1926
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9919
97.7475
98.2375
67.0385
6387914726365211421030
90.1926
jlack-gatkSNPtvmap_l150_m2_e0het
92.1348
98.8831
86.2488
87.0469
7171817169114359
5.1619
ciseli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
70.5551
95.3826
55.9831
73.4742
1446701455114427
2.3601
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
73.3800
60.1280
94.1249
85.4676
1832712153183281144321
28.0594
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
73.3800
60.1280
94.1249
85.4676
1832712153183281144321
28.0594
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50*
92.1861
94.9340
89.5928
65.6359
920149198571145571
49.8690
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
jmaeng-gatkSNP*map_l100_m2_e1*
89.5016
82.2404
98.1693
79.7702
614641327361453114679
6.8935
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.4653
94.4068
92.5425
38.8281
6971413142211146906
79.0576
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
34.4736
24.7232
56.9231
34.0999
737224415171148971
84.5819
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
35.7126
30.6097
42.8571
50.7598
73816738611148864
75.2613
gduggal-snapfbSNP*map_l150_m2_e1*
96.3459
96.2620
96.4300
78.3975
310061204310091148531
46.2544
anovak-vgINDEL*map_sirenhomalt
77.1234
89.6798
67.6512
75.5300
2381274240511501080
93.9130