PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
83251-83300 / 86044 show all
cchapple-customSNPtimap_l100_m2_e1het
97.1612
97.8036
96.5271
73.0715
30280680302961090274
25.1376
gduggal-bwafbSNP*HG002complexvar*
99.8109
99.7664
99.8554
20.0831
75262317627527831090464
42.5688
cchapple-customSNP*map_l150_m1_e0*
96.5908
96.7363
96.4458
77.1687
29610999296051091240
21.9982
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.9231
95.7613
94.0995
63.0798
17396770173991091598
54.8121
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.9231
95.7613
94.0995
63.0798
17396770173991091598
54.8121
jmaeng-gatkSNP*map_l100_m1_e0het
92.1457
87.4909
97.3237
81.8820
39685567439674109169
6.3245
cchapple-customSNPtimap_l100_m2_e1*
97.7339
97.6781
97.7898
68.9863
483361149483161092276
25.2747
ckim-gatkSNP*map_l100_m2_e1*
89.5170
82.2096
98.2503
79.5686
614411329661430109486
7.8611
ckim-vqsrSNPtv**
99.1585
98.4420
99.8855
27.4583
95458215108954496109457
5.2102
gduggal-snapfbSNP*map_l100_m0_e0het
95.9914
97.0526
94.9532
68.8933
20580625205831094492
44.9726
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
79.8568
84.6127
75.6070
64.0420
485088233941095247
22.5571
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
36.4602
27.1762
55.3790
36.8827
25668613591095912
83.2877
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
51.5950
42.4685
65.7179
59.2998
2123287621011096789
71.9891
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
51.5950
42.4685
65.7179
59.2998
2123287621011096789
71.9891
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
80.5908
97.1532
68.8529
65.1322
242371242510974
0.3646
ciseli-customSNPtimap_l125_m1_e0homalt
88.5271
87.3246
89.7632
65.2408
9645140096281098891
81.1475
gduggal-snapfbSNP*map_l150_m2_e1het
95.8511
96.9945
94.7343
76.7883
19751612197541098511
46.5392
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
72.3083
81.8625
64.7512
68.9679
2013446201710981086
98.9071
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
22.3230
16.2712
35.5425
80.2066
43222236061099407
37.0337
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.1357
96.1059
70.2007
87.2590
2542103258910994
0.3640
gduggal-bwafbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.1407
99.3309
96.9788
67.1842
35182237352771099205
18.6533
jmaeng-gatkSNP*map_l100_m1_e0*
89.2166
81.7563
98.1753
78.5878
591941320959183110078
7.0909
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
51.3330
45.2682
59.2743
64.1063
16121949160111001012
92.0000
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
35.8287
33.0357
39.1376
73.2950
703142570811011085
98.5468
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
23.7011
34.8943
17.9449
88.9091
231431241110210
0.9074
gduggal-bwavardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
49.6103
86.3158
34.8083
73.4368
5749159011051001
90.5882
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.3238
96.5464
96.1023
63.4311
27284976272701106763
68.9873
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
85.5828
97.0678
76.5280
56.7627
317896360611061089
98.4629
gduggal-bwavardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.0404
35.5733
40.8751
72.9582
757137176611081004
90.6137
ghariani-varprowlSNPtiHG002compoundhethomalt
92.9457
99.8242
86.9540
37.0935
73811373851108880
79.4224
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
97.2439
97.3027
97.1852
57.6417
35605987382561108730
65.8845
eyeh-varpipeSNP*map_l100_m0_e0*
98.1181
99.6468
96.6356
72.2026
3272511631854110929
2.6150
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
88.6118
96.7950
81.7043
50.5663
4953164495711101047
94.3243
gduggal-snapfbINDELD1_5HG002complexvarhet
94.7486
94.6159
94.8816
54.6441
196471118206321113329
29.5597
ghariani-varprowlSNP*segdup*
97.8779
99.6437
96.1737
92.2561
2796710027975111370
6.2893
ghariani-varprowlSNPtvHG002complexvarhomalt
99.3856
99.9338
98.8434
25.4168
9504863951211113736
66.1276
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
87.0072
98.9272
77.6508
87.8604
3873423874111574
6.6368
qzeng-customSNP**homalt
99.6134
99.3243
99.9041
17.3884
1172188797411620901115707
63.4081
cchapple-customSNP*map_l100_m0_e0het
95.9513
97.0667
94.8612
75.7604
20583622206011116255
22.8495
cchapple-customSNP*map_l100_m0_e0*
96.7025
96.7997
96.6055
71.5936
317901051317891117256
22.9185
ciseli-customINDELD16_PLUSHG002compoundhethomalt
1.0601
75.0000
0.5338
31.6717
62611181065
95.2594
ciseli-customSNPtimap_l250_m2_e0*
70.7049
66.8930
74.9776
92.1064
3350165833501118211
18.8730
cchapple-customSNP*map_l150_m2_e0het
95.7599
96.9701
94.5794
81.9061
19523610195421120245
21.8750
cchapple-customSNP*map_l150_m2_e0*
96.6523
96.8134
96.4917
78.8019
308371015308321121246
21.9447
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
80.3663
84.4740
76.6396
52.9071
501192136811122231
20.5882
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_diTR_11to50*
83.5750
73.9861
96.0194
60.2412
270739519270651122616
54.9020
dgrover-gatkSNPtv*het
99.8830
99.9556
99.8105
23.6829
591433263591362112357
5.0757
ciseli-customSNPtimap_l125_m2_e0homalt
88.6940
87.5770
89.8399
67.8832
9947141199301123909
80.9439
qzeng-customINDELD1_5HG002compoundhet*
88.1713
85.4271
91.0977
64.3947
104521783115021124856
76.1566
jlack-gatkSNPtvmap_l150_m1_e0het
91.9297
98.8339
85.9271
86.1869
6865816863112459
5.2491