PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
82851-82900 / 86044 show all
jlack-gatkSNP*map_l250_m2_e0*
93.5078
97.9074
89.4865
92.8768
7720165772090767
7.3870
gduggal-snapvardINDEL*map_l100_m2_e0het
85.0151
94.3650
77.3510
88.3503
21771303101908421
46.3656
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
52.3943
37.9325
84.6777
63.9143
522985565018908475
52.3128
mlin-fermikitSNPtvmap_l150_m1_e0homalt
59.5283
52.1287
69.3761
55.9108
205718892057908841
92.6211
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.2928
99.2077
91.6751
67.8866
10017809999908277
30.5066
ghariani-varprowlINDELI6_15HG002complexvar*
71.5536
66.2145
77.8293
58.1077
317316193191909871
95.8196
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
66.3492
99.1247
49.8623
65.6965
90689059105
0.5495
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
79.3964
87.2325
72.8520
53.8546
24463582442910909
99.8901
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
84.2619
97.2450
74.3373
66.4617
261274263691012
1.3187
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.3321
99.2576
91.7054
59.1877
100277510072911306
33.5895
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
62.4926
91.1184
47.5533
63.3312
83181826911847
92.9748
gduggal-snapvardINDEL*map_l100_m1_e0*
85.9341
89.2080
82.8920
85.9643
31993874414911427
46.8716
eyeh-varpipeSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.1889
99.5294
94.9560
60.6805
17767841715091186
9.4402
qzeng-customSNP*HG002complexvarhet
99.0563
98.3261
99.7975
19.7489
4577087792449025911250
27.4424
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
70.0058
58.6077
86.9078
48.1851
607042876054912765
83.8816
ckim-dragenSNPtimap_l100_m1_e0het
98.1230
99.2485
97.0227
71.3768
297172252972091287
9.5395
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
81.5701
97.8381
69.9407
68.1937
212747212291219
2.0833
eyeh-varpipeSNPtimap_siren*
99.4355
99.7967
99.0768
57.9702
1001512049787491255
6.0307
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.9895
86.0506
94.3064
43.1744
15206246515106912765
83.8816
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.9895
86.0506
94.3064
43.1744
15206246515106912765
83.8816
dgrover-gatkINDEL**homalt
99.5819
99.8906
99.2752
59.0938
125035137125045913890
97.4808
jmaeng-gatkSNPtimap_sirenhet
96.0962
93.8396
98.4641
69.3151
5853938435853091376
8.3242
jlack-gatkSNP*map_l250_m2_e1*
93.5343
97.8966
89.5442
92.9358
7819168781991369
7.5575
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.9772
98.0684
95.9100
75.5337
2147642321433914898
98.2495
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.3405
95.3885
93.3153
37.1067
637130812759914716
78.3370
astatham-gatkINDEL**het
99.5127
99.4973
99.5281
60.7701
193157976192779914573
62.6915
eyeh-varpipeSNP*map_l125_m1_e0het
98.1718
99.6126
96.7721
75.4925
282821102740291428
3.0635
gduggal-snapfbSNPtilowcmp_SimpleRepeat_quadTR_51to200het
10.6178
83.3333
5.6701
81.1174
5511559158
0.8743
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_51to200*
4.1580
76.9231
2.1368
79.9012
206209167
0.7642
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
78.8680
83.9810
74.3417
54.2249
26585072654916914
99.7817
ckim-vqsrINDEL**homalt
99.5675
99.8658
99.2711
58.9429
125004168125017918901
98.1481
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
56.9297
50.5845
65.0951
55.0427
160115641712918650
70.8061
ghariani-varprowlINDELD6_15HG002complexvarhet
84.7743
95.1923
76.4117
58.8552
29701502977919877
95.4298
ndellapenna-hhgaINDEL*HG002complexvarhet
97.4850
96.9835
97.9917
54.0711
44818139444840919671
73.0141
gduggal-snapvardINDEL*map_l100_m2_e1het
84.8243
94.1101
77.2064
88.4817
22051383123922425
46.0954
jpowers-varprowlSNPtimap_siren*
98.7281
98.3847
99.0739
58.8371
98734162198737923255
27.6273
ckim-isaacINDELD1_5HG002compoundhet*
88.8135
85.9501
91.8743
43.5269
10516171910436923829
89.8158
ckim-gatkINDEL**homalt
99.5712
99.8778
99.2664
58.9388
125019153125032924905
97.9437
mlin-fermikitSNP*map_l150_m0_e0*
47.5288
33.5688
81.3658
64.0159
403979934039925818
88.4324
mlin-fermikitSNPtiHG002compoundhet*
93.7043
92.8195
94.6061
36.5228
16223125516224925739
79.8919
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
94.0704
96.0794
92.1437
38.7632
803832810849925888
96.0000
astatham-gatkINDEL**homalt
99.5755
99.8874
99.2657
58.8575
125031141125041925908
98.1622
jpowers-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.7595
98.7696
96.7698
62.5065
2761534427711925281
30.3784
gduggal-bwafbSNP*HG002complexvarhet
99.7664
99.7319
99.8010
20.1804
4642521248464384926324
34.9892
asubramanian-gatkSNPti**
99.0306
98.1234
99.9548
19.2315
204637539136204631692690
9.7192
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.8647
96.7839
94.9628
65.9014
1700356517476927381
41.1003
gduggal-snapvardINDELC6_15**
51.3896
100.0000
34.5801
85.2457
70490927158
17.0442
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.9007
77.8470
90.9754
41.3740
862724559355928916
98.7069
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
65.8825
97.2660
49.8107
91.6259
9252692192861
6.5733
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2376
96.9527
97.5243
55.9478
36747115536556928901
97.0905