PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82701-82750 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.5741 | 90.2916 | 94.9750 | 58.0257 | 14834 | 1595 | 15952 | 844 | 289 | 34.2417 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.2911 | 96.9146 | 97.6705 | 52.3019 | 35463 | 1129 | 35387 | 844 | 761 | 90.1659 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | het | 90.4803 | 98.5003 | 83.6680 | 86.8150 | 4335 | 66 | 4334 | 846 | 47 | 5.5556 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | het | 87.9050 | 79.8638 | 97.7467 | 81.4691 | 37056 | 9343 | 36699 | 846 | 656 | 77.5414 | |
| raldana-dualsentieon | SNP | tv | * | * | 99.9049 | 99.8971 | 99.9127 | 21.2799 | 968692 | 998 | 968612 | 846 | 44 | 5.2010 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.8220 | 96.7435 | 89.2061 | 36.1513 | 7011 | 236 | 7000 | 847 | 807 | 95.2774 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | het | 96.4982 | 97.3699 | 95.6419 | 73.0724 | 18585 | 502 | 18588 | 847 | 395 | 46.6352 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | * | 84.9127 | 95.5933 | 76.3788 | 91.3348 | 2755 | 127 | 2742 | 848 | 31 | 3.6557 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e1 | het | 80.5690 | 96.7430 | 69.0285 | 92.1093 | 1901 | 64 | 1890 | 848 | 29 | 3.4198 | |
| ciseli-custom | SNP | ti | segdup | * | 97.2840 | 98.8381 | 95.7779 | 90.5362 | 19310 | 227 | 19237 | 848 | 118 | 13.9151 | |
| qzeng-custom | SNP | * | map_l100_m2_e1 | het | 87.9932 | 79.9949 | 97.7685 | 81.4422 | 37516 | 9382 | 37154 | 848 | 656 | 77.3585 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | * | 83.8659 | 73.5398 | 97.5657 | 83.0916 | 34360 | 12363 | 33987 | 848 | 710 | 83.7264 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 45.3594 | 46.8085 | 43.9974 | 84.7177 | 638 | 725 | 667 | 849 | 19 | 2.2379 | |
| gduggal-bwafb | INDEL | D6_15 | * | * | 94.1659 | 91.7408 | 96.7228 | 49.8237 | 23937 | 2155 | 25057 | 849 | 794 | 93.5218 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.1692 | 86.5403 | 83.8409 | 73.2417 | 4430 | 689 | 4405 | 849 | 604 | 71.1425 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | het | 90.7389 | 97.8759 | 84.5721 | 93.7676 | 4654 | 101 | 4654 | 849 | 57 | 6.7138 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | homalt | 89.1763 | 87.8306 | 90.5639 | 64.9644 | 8170 | 1132 | 8158 | 850 | 639 | 75.1765 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.1152 | 33.2790 | 47.4335 | 60.0049 | 613 | 1229 | 767 | 850 | 647 | 76.1176 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | homalt | 93.7665 | 98.4176 | 89.5352 | 35.5677 | 7277 | 117 | 7281 | 851 | 725 | 85.1939 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | * | 97.8210 | 98.9893 | 96.6799 | 73.9056 | 24780 | 253 | 24781 | 851 | 137 | 16.0987 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e1 | * | 84.9786 | 95.5761 | 76.4966 | 91.4134 | 2787 | 129 | 2773 | 852 | 31 | 3.6385 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | * | 83.9768 | 73.7003 | 97.5835 | 83.0865 | 34788 | 12414 | 34406 | 852 | 714 | 83.8028 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | * | 97.9194 | 99.0744 | 96.7911 | 45.9764 | 25583 | 239 | 25699 | 852 | 222 | 26.0563 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | het | 64.2691 | 59.7419 | 69.5388 | 93.5208 | 1944 | 1310 | 1945 | 852 | 20 | 2.3474 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | homalt | 87.0667 | 85.6493 | 88.5319 | 72.6293 | 6589 | 1104 | 6585 | 853 | 699 | 81.9461 | |
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9005 | 98.1874 | 97.6153 | 68.2457 | 34777 | 642 | 34917 | 853 | 41 | 4.8066 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | * | 96.1232 | 99.6842 | 92.8078 | 73.2654 | 11049 | 35 | 11007 | 853 | 14 | 1.6413 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | het | 98.1558 | 99.0660 | 97.2621 | 74.0240 | 30336 | 286 | 30338 | 854 | 157 | 18.3841 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 32.9929 | 22.6568 | 60.6716 | 52.9029 | 1344 | 4588 | 1319 | 855 | 827 | 96.7251 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 70.2185 | 89.1892 | 57.9025 | 52.1104 | 1188 | 144 | 1176 | 855 | 827 | 96.7251 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | * | 52.3097 | 37.7919 | 84.9392 | 57.8951 | 4823 | 7939 | 4822 | 855 | 764 | 89.3567 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.0796 | 97.3480 | 87.3522 | 68.3694 | 6020 | 164 | 5912 | 856 | 19 | 2.2196 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | * | 93.0649 | 98.2657 | 88.3869 | 84.2156 | 6516 | 115 | 6515 | 856 | 54 | 6.3084 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | * | 75.9486 | 81.4609 | 71.1351 | 32.7367 | 1907 | 434 | 2112 | 857 | 326 | 38.0397 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | * | 96.8890 | 96.7104 | 97.0682 | 71.9792 | 28370 | 965 | 28374 | 857 | 408 | 47.6079 | |
| dgrover-gatk | INDEL | * | HG002compoundhet | homalt | 61.4004 | 99.7085 | 44.3580 | 85.1072 | 684 | 2 | 684 | 858 | 856 | 99.7669 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | het | 64.3765 | 59.8060 | 69.7034 | 93.5598 | 1973 | 1326 | 1974 | 858 | 20 | 2.3310 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9722 | 98.8576 | 99.0871 | 73.7310 | 93370 | 1079 | 93240 | 859 | 756 | 88.0093 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | * | 98.6066 | 98.9944 | 98.2219 | 68.9891 | 47449 | 482 | 47451 | 859 | 183 | 21.3038 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e1 | * | 97.8230 | 98.9914 | 96.6819 | 73.9531 | 25028 | 255 | 25029 | 859 | 138 | 16.0652 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.7054 | 98.3117 | 95.1508 | 57.0643 | 16887 | 290 | 16875 | 860 | 129 | 15.0000 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.5482 | 82.0297 | 77.2125 | 65.3284 | 3314 | 726 | 2914 | 860 | 707 | 82.2093 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 43.4211 | 35.2336 | 56.5657 | 54.1348 | 1131 | 2079 | 1120 | 860 | 639 | 74.3023 | |
| qzeng-custom | INDEL | I6_15 | * | homalt | 92.4648 | 97.8362 | 87.6525 | 43.2864 | 6104 | 135 | 6105 | 860 | 457 | 53.1395 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | * | 93.2444 | 97.7569 | 89.1302 | 92.5027 | 7060 | 162 | 7060 | 861 | 66 | 7.6655 | |
| ckim-gatk | SNP | ti | map_siren | het | 96.2259 | 94.0079 | 98.5512 | 68.8261 | 58644 | 3738 | 58635 | 862 | 83 | 9.6288 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.5790 | 73.7247 | 96.4741 | 64.8422 | 23586 | 8406 | 23586 | 862 | 511 | 59.2807 | |
| ckim-isaac | SNP | ti | * | * | 98.6272 | 97.3318 | 99.9576 | 14.8667 | 2029873 | 55645 | 2030218 | 862 | 462 | 53.5963 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | het | 98.1632 | 99.0762 | 97.2668 | 74.0488 | 30674 | 286 | 30676 | 862 | 158 | 18.3295 | |
| gduggal-bwafb | INDEL | I1_5 | HG002compoundhet | * | 88.8259 | 85.0923 | 92.9023 | 63.5931 | 10514 | 1842 | 11309 | 864 | 824 | 95.3704 | |