PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
82701-82750 / 86044 show all
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
92.5741
90.2916
94.9750
58.0257
14834159515952844289
34.2417
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
97.2911
96.9146
97.6705
52.3019
35463112935387844761
90.1659
jlack-gatkSNPtvmap_l125_m0_e0het
90.4803
98.5003
83.6680
86.8150
433566433484647
5.5556
qzeng-customSNP*map_l100_m2_e0het
87.9050
79.8638
97.7467
81.4691
37056934336699846656
77.5414
raldana-dualsentieonSNPtv**
99.9049
99.8971
99.9127
21.2799
96869299896861284644
5.2010
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
92.8220
96.7435
89.2061
36.1513
70112367000847807
95.2774
gduggal-snapfbSNPtimap_l125_m2_e1het
96.4982
97.3699
95.6419
73.0724
1858550218588847395
46.6352
gduggal-snapvardSNPtvmap_l250_m2_e0*
84.9127
95.5933
76.3788
91.3348
2755127274284831
3.6557
gduggal-snapvardSNPtvmap_l250_m2_e1het
80.5690
96.7430
69.0285
92.1093
190164189084829
3.4198
ciseli-customSNPtisegdup*
97.2840
98.8381
95.7779
90.5362
1931022719237848118
13.9151
qzeng-customSNP*map_l100_m2_e1het
87.9932
79.9949
97.7685
81.4422
37516938237154848656
77.3585
qzeng-customSNP*map_l125_m2_e0*
83.8659
73.5398
97.5657
83.0916
343601236333987848710
83.7264
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
45.3594
46.8085
43.9974
84.7177
63872566784919
2.2379
gduggal-bwafbINDELD6_15**
94.1659
91.7408
96.7228
49.8237
23937215525057849794
93.5218
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.1692
86.5403
83.8409
73.2417
44306894405849604
71.1425
jlack-gatkSNP*map_l250_m1_e0het
90.7389
97.8759
84.5721
93.7676
4654101465484957
6.7138
ciseli-customSNPtvmap_l100_m2_e1homalt
89.1763
87.8306
90.5639
64.9644
817011328158850639
75.1765
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
39.1152
33.2790
47.4335
60.0049
6131229767850647
76.1176
mlin-fermikitSNPtiHG002compoundhethomalt
93.7665
98.4176
89.5352
35.5677
72771177281851725
85.1939
ghariani-varprowlSNPtvmap_l100_m2_e0*
97.8210
98.9893
96.6799
73.9056
2478025324781851137
16.0987
gduggal-snapvardSNPtvmap_l250_m2_e1*
84.9786
95.5761
76.4966
91.4134
2787129277385231
3.6385
qzeng-customSNP*map_l125_m2_e1*
83.9768
73.7003
97.5835
83.0865
347881241434406852714
83.8028
gduggal-bwafbSNP*HG002compoundhet*
97.9194
99.0744
96.7911
45.9764
2558323925699852222
26.0563
ciseli-customSNPtimap_l250_m2_e0het
64.2691
59.7419
69.5388
93.5208
19441310194585220
2.3474
ciseli-customSNPtimap_l150_m2_e1homalt
87.0667
85.6493
88.5319
72.6293
658911046585853699
81.9461
jpowers-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.9005
98.1874
97.6153
68.2457
347776423491785341
4.8066
eyeh-varpipeSNPtvmap_l100_m0_e0*
96.1232
99.6842
92.8078
73.2654
11049351100785314
1.6413
ghariani-varprowlSNPtimap_l100_m2_e0het
98.1558
99.0660
97.2621
74.0240
3033628630338854157
18.3841
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
32.9929
22.6568
60.6716
52.9029
134445881319855827
96.7251
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
70.2185
89.1892
57.9025
52.1104
11881441176855827
96.7251
mlin-fermikitSNPtimap_l125_m0_e0*
52.3097
37.7919
84.9392
57.8951
482379394822855764
89.3567
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
92.0796
97.3480
87.3522
68.3694
6020164591285619
2.2196
jlack-gatkSNPtvmap_l125_m0_e0*
93.0649
98.2657
88.3869
84.2156
6516115651585654
6.3084
qzeng-customINDELD16_PLUSHG002compoundhet*
75.9486
81.4609
71.1351
32.7367
19074342112857326
38.0397
gduggal-snapfbSNPtimap_l125_m1_e0*
96.8890
96.7104
97.0682
71.9792
2837096528374857408
47.6079
dgrover-gatkINDEL*HG002compoundhethomalt
61.4004
99.7085
44.3580
85.1072
6842684858856
99.7669
ciseli-customSNPtimap_l250_m2_e1het
64.3765
59.8060
69.7034
93.5598
19731326197485820
2.3310
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9722
98.8576
99.0871
73.7310
93370107993240859756
88.0093
ghariani-varprowlSNPtimap_l100_m1_e0*
98.6066
98.9944
98.2219
68.9891
4744948247451859183
21.3038
ghariani-varprowlSNPtvmap_l100_m2_e1*
97.8230
98.9914
96.6819
73.9531
2502825525029859138
16.0652
ciseli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
96.7054
98.3117
95.1508
57.0643
1688729016875860129
15.0000
ckim-isaacINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
79.5482
82.0297
77.2125
65.3284
33147262914860707
82.2093
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
43.4211
35.2336
56.5657
54.1348
113120791120860639
74.3023
qzeng-customINDELI6_15*homalt
92.4648
97.8362
87.6525
43.2864
61041356105860457
53.1395
jlack-gatkSNP*map_l250_m1_e0*
93.2444
97.7569
89.1302
92.5027
7060162706086166
7.6655
ckim-gatkSNPtimap_sirenhet
96.2259
94.0079
98.5512
68.8261
5864437385863586283
9.6288
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.5790
73.7247
96.4741
64.8422
23586840623586862511
59.2807
ckim-isaacSNPti**
98.6272
97.3318
99.9576
14.8667
2029873556452030218862462
53.5963
ghariani-varprowlSNPtimap_l100_m2_e1het
98.1632
99.0762
97.2668
74.0488
3067428630676862158
18.3295
gduggal-bwafbINDELI1_5HG002compoundhet*
88.8259
85.0923
92.9023
63.5931
10514184211309864824
95.3704