PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
82551-82600 / 86044 show all
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.6262
97.1247
98.1330
61.8291
42089124641891797748
93.8519
raldana-dualsentieonINDEL**het
99.3035
99.0228
99.5858
57.9096
1922361897191867798611
76.5664
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
97.3750
99.4887
95.3492
61.3437
163458416381799639
79.9750
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50*
80.6495
78.6024
82.8061
85.2794
38021035384879994
11.7647
ciseli-customINDEL*map_l100_m2_e1*
70.6710
66.2407
75.7364
88.0952
248812682494799531
66.4581
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
92.2052
90.5600
93.9113
48.2920
10754112112339800737
92.1250
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200*
39.2277
31.6516
51.5719
45.1410
6651436853801448
55.9301
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
46.8255
38.7947
59.0491
58.6382
103016251155801315
39.3258
gduggal-bwafbINDELD1_5HG002compoundhet*
91.0728
88.7045
93.5709
64.7882
10853138211658801716
89.3883
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
48.2628
55.3309
42.7960
40.3404
602486600802781
97.3815
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.7218
88.4618
97.4128
51.1450
15763205630197802660
82.2943
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2034
96.5701
97.8450
55.8440
36602130036414802774
96.5087
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
69.3130
73.8369
65.3114
41.5571
12224331510802609
75.9352
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.9824
96.8153
97.1501
58.2231
2736090027373803642
79.9502
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
46.8164
79.8780
33.1115
59.9867
39399398804747
92.9104
ciseli-customINDELC1_5*homalt
0.0000
0.0000
24.2938
93.8051
00258804156
19.4030
ckim-dragenSNP*segdup*
98.4991
99.8219
97.2109
92.1838
28017502802280414
1.7413
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.5407
95.2841
91.8599
48.3177
90724499073804405
50.3731
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
81.7820
89.5719
75.2387
54.8652
24482852443804793
98.6318
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8420
95.6294
98.0857
58.9442
41441189441248805768
95.4037
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8990
97.6739
98.1251
62.1451
42327100842130805744
92.4224
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
73.6476
94.3083
60.4126
87.0492
119372123080674
9.1811
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
29.6071
24.5130
37.3737
73.8468
302930481806369
45.7816
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
31.7791
28.9773
35.1807
45.7989
357875438807617
76.4560
anovak-vgSNPtiHG002compoundhethomalt
82.5870
78.8207
86.7313
34.8753
582815665275807534
66.1710
qzeng-customSNPtimap_siren*
92.5421
86.8188
99.0732
61.8902
871271322886370808570
70.5446
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200*
52.7192
50.5474
55.0862
52.4074
10621039991808803
99.3812
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
43.2336
78.7185
29.8002
45.0072
34493343808773
95.6683
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.1393
96.8242
97.4564
67.3706
30976101630958808786
97.2772
ghariani-varprowlSNPtvmap_l100_m1_e0*
97.8612
98.9756
96.7717
72.1277
2425025124251809135
16.6873
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.4487
74.1077
83.3299
46.2271
11423994044809800
98.8875
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
58.8151
45.7510
82.3221
66.0165
277832943772810398
49.1358
gduggal-snapplatSNPtvmap_l100_m1_e0het
94.6299
94.5320
94.7279
81.7875
1457484314572811394
48.5820
qzeng-customSNP*map_l100_m1_e0het
87.7038
79.5123
97.7769
80.6669
36066929335714812655
80.6650
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
77.9136
81.0000
75.0538
73.8785
24305702443812202
24.8768
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
75.9729
97.1161
62.3900
67.1535
13474013478124
0.4926
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.7207
98.0134
95.4617
70.0763
1746535417080812691
85.0985
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.6448
97.1963
98.0976
61.8032
42120121541922813755
92.8659
gduggal-snapplatSNPtimap_l150_m1_e0het
92.8712
92.3848
93.3627
86.3201
1142894211450814456
56.0197
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.4632
80.3154
98.4508
79.5350
517481268351729814499
61.3022
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
93.4534
92.3513
94.5822
43.0987
961179614228815315
38.6503
cchapple-customSNPtimap_l125_m1_e0het
96.3594
97.1203
95.6103
76.7136
1774052617751815226
27.7301
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8510
97.6024
98.1008
61.8066
42296103942098815759
93.1288
ckim-isaacINDELD1_5HG002compoundhethet
68.7756
84.4907
57.9897
63.2088
14602681125815730
89.5706
cchapple-customSNPtimap_l125_m1_e0*
97.0755
96.9422
97.2092
72.6876
2843889728423816227
27.8186
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.9278
97.6646
85.0604
50.5657
46421114646816787
96.4461
eyeh-varpipeSNP*HG002compoundhet*
97.2195
99.1054
95.4041
44.2893
2559123116939816176
21.5686
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
58.8731
57.9621
59.8131
41.7312
11328211216817563
68.9106