PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
82251-82300 / 86044 show all
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.4681
90.2214
92.7497
68.5930
90889858942699645
92.2747
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
63.6599
61.2245
66.2970
66.6238
13208361375699438
62.6609
ghariani-varprowlSNPtimap_l125_m2_e1*
98.2162
98.7046
97.7326
76.3818
3017339630173700158
22.5714
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
86.4900
97.9500
77.4308
59.1746
238950240570119
2.7104
ckim-dragenSNPtimap_l125_m2_e0*
98.4121
99.1176
97.7165
74.4145
299912672999870181
11.5549
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
91.1226
86.4620
96.3144
38.7578
495677618319701658
93.8659
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
11.0979
9.3988
13.5468
44.1924
1111070110702699
99.5726
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
22.0217
71.6216
13.0112
43.9194
10642105702699
99.5726
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
69.0860
69.8980
68.2927
72.8277
15076491512702277
39.4587
mlin-fermikitINDELD1_5HG002compoundhethomalt
41.8824
90.7216
27.2257
80.6916
26427263703687
97.7240
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7409
96.6568
98.8496
59.7558
29461101960407703560
79.6586
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7409
96.6568
98.8496
59.7558
29461101960407703560
79.6586
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
89.7564
96.6277
83.7975
65.1703
36391273641704688
97.7273
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.7564
96.6277
83.7975
65.1703
36391273641704688
97.7273
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
79.6213
77.5816
81.7711
43.7436
31639143158704666
94.6023
jpowers-varprowlSNP*map_l150_m2_e0het
96.1913
95.9023
96.4821
82.5326
1930882519308704206
29.2614
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
71.6758
63.5678
82.1546
59.3969
1061960863241704487
69.1761
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
71.6758
63.5678
82.1546
59.3969
1061960863241704487
69.1761
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_51to200*
23.1772
16.4208
39.3809
42.5111
3451756458705585
82.9787
ciseli-customSNPtvsegdup*
95.0488
98.0661
92.2117
92.0351
8367165834770588
12.4823
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
82.3435
83.6876
81.0419
74.6270
30325913018706302
42.7762
ckim-dragenSNPtimap_l125_m2_e1*
98.4185
99.1233
97.7236
74.4858
303012683030870681
11.4731
cchapple-customINDEL*HG002compoundhethet
96.8882
95.2125
98.6240
55.6229
389819650675707621
87.8359
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50het
77.5375
77.3507
77.7253
87.2862
2435713246770754
7.6379
mlin-fermikitSNPtvHG002compoundhet*
91.2208
90.4965
91.9568
50.8884
80758488083707593
83.8755
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
92.4964
96.7963
88.5622
52.1231
54991825482708693
97.8814
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
52.1457
98.9446
35.4015
37.2279
3754388708669
94.4915
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
77.1235
65.2618
94.2549
80.4969
11629619011632709196
27.6446
gduggal-snapplatINDEL*HG002compoundhethetalt
52.0071
36.1279
92.7918
75.2011
9097160839127709591
83.3568
jpowers-varprowlSNP*map_l150_m2_e1het
96.2073
95.9191
96.4972
82.5948
1953283119532709207
29.1961
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
41.4578
77.0718
28.3552
59.9110
27983281710706
99.4366
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_diTR_11to50het
87.2516
95.2396
80.4999
81.9090
2941147293171057
8.0282
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
90.7313
91.0661
90.3989
49.5222
61166006685710208
29.2958
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
39.9506
39.3669
40.5518
64.0084
485747485711356
50.0703
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
79.9918
88.3797
73.0580
45.8556
540711928711372
52.3207
hfeng-pmm2INDEL**het
99.3911
99.1521
99.6313
58.9414
1924871646192126711412
57.9466
ckim-dragenSNPtvmap_sirenhet
98.4766
99.4128
97.5580
65.5354
284411682844471252
7.3034
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.5231
98.6023
94.5298
62.0425
1234617512304712693
97.3315
jpowers-varprowlSNP*segduphet
97.3794
98.7931
96.0056
92.7629
17108209171137126
0.8427
ghariani-varprowlINDELD1_5HG002compoundhethomalt
41.9971
92.4399
27.1706
69.3007
26922266713597
83.7307
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
77.6220
87.0095
70.0629
67.3332
16412451671714601
84.1737
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
44.0199
83.7017
29.8625
62.4216
30359304714698
97.7591
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
36.4192
29.7932
46.8354
63.9946
6341494629714663
92.8571
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.0359
80.0905
20.0224
83.6832
1774417971542
5.8741
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
hfeng-pmm2SNPti*het
99.9215
99.8989
99.9442
17.8405
12805951296128054571524
3.3566
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.7819
78.2631
81.3608
56.9182
31188663121715658
92.0280
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.0845
29.5144
35.1449
62.1659
389929388716700
97.7654
qzeng-customSNP*map_l150_m1_e0*
80.7203
69.2737
96.6985
86.4603
21204940520971716612
85.4749
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
83.6454
99.5085
72.1445
74.1800
18229185771713
1.8131