PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
81951-82000 / 86044 show all
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.7688
92.5437
87.1556
81.5735
39223164207620247
39.8387
bgallagher-sentieonINDELI1_5**
99.4227
99.2586
99.5873
58.2134
1495471117149597620500
80.6452
jmaeng-gatkSNPtimap_l100_m2_e1*
90.0240
82.8837
98.5106
78.5961
4101584704100862064
10.3226
jmaeng-gatkSNP*segduphet
97.9514
99.4283
96.5177
95.0045
1721899172126212
0.3221
anovak-vgINDELD6_15HG002complexvarhet
77.7392
75.0641
80.6119
50.1246
23427782582621443
71.3366
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
72.1995
97.7700
57.2314
91.8059
8331983162150
8.0515
gduggal-bwavardSNPtvmap_l250_m2_e1het
85.2663
97.9135
75.5126
92.7832
192441191562113
2.0934
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.4763
93.5448
85.7470
50.2621
41592873742622558
89.7106
rpoplin-dv42INDELD1_5**
99.4429
99.3110
99.5751
58.2332
1457341011145779622549
88.2637
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
92.3938
89.4378
95.5519
45.2869
12329145613383623612
98.2343
gduggal-bwavardSNPtvmap_l250_m2_e0*
88.8754
97.3629
81.7490
91.8702
280676279562417
2.7244
ndellapenna-hhgaSNPti*het
99.8668
99.7824
99.9512
16.9483
12791022789127910362483
13.3013
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.5512
99.0752
98.0327
69.1780
308552883109462424
3.8462
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5512
99.0752
98.0327
69.1780
308552883109462424
3.8462
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
31.4068
29.5238
33.5463
77.9887
31074031562444
7.0513
jmaeng-gatkINDELD1_5*het
99.4941
99.6997
99.2893
60.9724
8731126387316625129
20.6400
ciseli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
96.0994
97.6994
94.5510
57.2127
108292551084562521
3.3600
raldana-dualsentieonSNP*map_sirenhet
99.3673
99.4219
99.3127
56.6962
904655269045162610
1.5974
anovak-vgSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.4699
97.9603
96.9843
55.7493
1978741220132626469
74.9201
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2520
97.4920
99.0239
63.2840
63712163963508626529
84.5048
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2520
97.4920
99.0239
63.2840
63712163963508626529
84.5048
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
45.4362
49.0690
42.3041
95.5909
44846545962633
5.2716
gduggal-snapvardINDEL*map_l125_m1_e0het
83.6174
95.9551
74.0909
89.7946
1281541793627240
38.2775
gduggal-snapvardINDELC1_5lowcmp_SimpleRepeat_quadTR_11to50het
35.0259
100.0000
21.2312
82.4631
1016962743
6.8581
anovak-vgINDELI1_5map_l100_m1_e0*
58.0113
59.2233
56.8479
83.7016
793546826627447
71.2919
mlin-fermikitSNPtvmap_l125_m0_e0homalt
55.7975
49.6173
63.7363
55.1608
110211191102627574
91.5470
gduggal-bwavardSNPtvmap_l250_m2_e1*
88.9493
97.3937
81.8524
91.9441
284076282862717
2.7113
mlin-fermikitINDELI16_PLUS**
82.9403
77.8109
88.7937
66.6528
496214154976628607
96.6561
hfeng-pmm1SNP**het
99.9238
99.8812
99.9665
18.1036
18713612226187123662848
7.6433
gduggal-bwaplatSNP*map_sirenhet
92.3406
86.3635
99.2066
74.9301
785831240878653629157
24.9603
gduggal-snapvardINDELC1_5lowcmp_SimpleRepeat_quadTR_11to50*
38.6341
100.0000
23.9420
83.0324
1019862944
6.9952
ghariani-varprowlSNPtvmap_l125_m1_e0*
97.4146
98.6888
96.1728
76.4417
1580621015806629115
18.2830
gduggal-snapfbSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.6878
99.4355
94.0878
74.6352
10040571002663084
13.3333
eyeh-varpipeSNP*map_l125_m0_e0het
97.2776
99.5499
95.1068
80.0626
12607571224563017
2.6984
cchapple-customSNPtimap_l100_m0_e0het
96.2084
96.8676
95.5581
74.9532
1354543813553630172
27.3016
cchapple-customSNPtimap_l100_m0_e0*
96.8619
96.6377
97.0872
70.6515
2103973221032631173
27.4168
jpowers-varprowlSNPtimap_l100_m2_e0*
98.2207
97.7472
98.6987
70.3702
47858110347860631192
30.4279
gduggal-bwafbINDELD1_5HG002compoundhethomalt
46.3350
95.8763
30.5495
82.2716
27912278632615
97.3101
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.5778
91.1697
96.1165
54.9134
14630141715642632605
95.7278
gduggal-snapvardINDELD16_PLUS*het
17.6734
11.3960
39.3474
71.0797
3602799410632372
58.8608
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
49.6401
47.9452
51.4593
46.5298
420456670632480
75.9494
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.5092
75.5024
90.9494
56.1947
634920606351632617
97.6266
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.3085
94.9832
95.6360
75.7457
1384073113850632351
55.5380
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.3085
94.9832
95.6360
75.7457
1384073113850632351
55.5380
qzeng-customINDELI16_PLUS*het
85.2063
89.5879
81.2333
62.0542
24352832740633156
24.6445
jmaeng-gatkSNP*segdup*
98.5236
99.2803
97.7783
93.6584
278652022785963314
2.2117
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
87.4269
95.5834
80.5530
88.6814
2597120262263390
14.2180
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
92.1748
98.3088
86.7613
48.1654
3604624155634622
98.1073
gduggal-snapplatSNP*HG002complexvarhomalt
98.9173
98.0729
99.7763
21.2516
2830145561282787634338
53.3123
gduggal-snapvardINDELD16_PLUS**
10.7850
6.2058
41.1492
71.3717
4216363444635373
58.7402