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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
81701-81750 / 86044 show all
ghariani-varprowlSNPtimap_l150_m2_e1*
97.8866
98.4558
97.3240
80.2448
2040332020403561134
23.8859
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.4868
81.5589
85.5080
68.6930
33177503316562522
92.8826
jmaeng-gatkSNP*map_l100_m0_e0het
85.9916
77.4251
96.6894
86.7577
1641847871641456245
8.0071
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
82.7813
80.4513
85.2502
40.8125
32807973254563503
89.3428
mlin-fermikitINDELD6_15HG002compoundhethomalt
6.8943
83.3333
3.5959
68.2436
20421563555
98.5790
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
94.7857
94.3579
95.2175
45.4647
1120567011209563510
90.5861
hfeng-pmm2INDEL*HG002compoundhethomalt
70.6370
99.4169
54.7791
80.4614
6824682563558
99.1119
jmaeng-gatkSNP*map_l150_m2_e0het
84.8178
75.7016
96.4302
90.4936
1524148921523556439
6.9149
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.8333
42.9384
59.3660
55.4700
8301103824564402
71.2766
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
76.9641
82.1855
72.3665
61.3081
17903881477564505
89.5390
mlin-fermikitINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
91.3183
97.0313
86.2405
69.6055
35301083535564553
98.0496
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
86.0917
93.8776
79.4984
70.7309
2024132218756473
12.9433
gduggal-bwafbSNPtiHG002complexvarhet
99.7807
99.7408
99.8207
18.4948
313950816314019564202
35.8156
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
64.1207
64.2111
64.0306
63.4499
11686511004564554
98.2270
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
64.1207
64.2111
64.0306
63.4499
11686511004564554
98.2270
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
62.4653
60.2952
64.7975
51.6129
8175381040565411
72.7434
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
81.2017
96.8037
69.9308
71.0611
636211314565439
77.6991
jmaeng-gatkSNP*map_l100_m0_e0*
82.8475
71.9345
97.6638
84.1509
2362492172362056548
8.4956
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3301
95.6145
99.1085
62.8544
62485286662808565237
41.9469
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3301
95.6145
99.1085
62.8544
62485286662808565237
41.9469
ckim-gatkSNPtimap_l100_m1_e0*
89.7917
82.4352
98.5900
77.1488
3951284193950556568
12.0354
ciseli-customINDELC1_5HG002complexvar*
31.3007
28.5714
34.6065
88.1221
25299565143
25.3097
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.1406
89.3302
90.9658
70.1878
57356855689565335
59.2920
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.1406
89.3302
90.9658
70.1878
57356855689565335
59.2920
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.3847
84.0798
97.7117
90.1711
24141457124169566135
23.8516
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.3847
84.0798
97.7117
90.1711
24141457124169566135
23.8516
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8272
98.5395
99.1166
73.0877
6349094163503566450
79.5053
qzeng-customSNPtiHG002complexvarhet
99.0720
98.3388
99.8162
18.0479
3095375229307433566153
27.0318
jmaeng-gatkSNP*map_l150_m2_e0*
80.7195
68.8748
97.4842
88.8293
2193899142193256641
7.2438
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
91.9167
97.2077
87.1719
66.1173
3899112385356713
2.2928
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
75.5916
74.7677
76.4339
43.0667
16095431839567503
88.7125
gduggal-snapvardINDELD1_5map_sirenhet
89.3607
98.0237
82.1046
85.3259
2232452606568243
42.7817
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
44.5932
32.0350
73.3458
78.2195
179338041563568142
25.0000
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
56.3704
41.2427
89.0242
57.5472
458065254607568500
88.0282
mlin-fermikitSNP*map_l250_m2_e0*
47.3085
33.2150
82.1776
79.9585
261952662619568495
87.1479
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8737
96.6718
99.1058
64.7457
63176217562956568465
81.8662
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8737
96.6718
99.1058
64.7457
63176217562956568465
81.8662
jlack-gatkSNPtisegduphet
97.5937
99.8088
95.4748
94.2828
1200723120055695
0.8787
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.8931
74.1034
96.6631
64.8282
16488576216483569336
59.0510
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
94.8741
95.6080
94.1515
50.7143
23511089160569536
94.2004
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
58.8404
78.7365
46.9711
49.1951
511138504569529
92.9701
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.2571
98.0815
98.4334
52.3164
3589070235814570538
94.3860
jpowers-varprowlSNPtimap_l100_m1_e0het
97.5455
97.0209
98.0758
71.2709
2905089229052570164
28.7719
ndellapenna-hhgaINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
76.4026
92.5078
65.0735
61.5548
889721062570543
95.2632
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
34.9475
95.6522
21.3793
16.5708
1547155570530
92.9825
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
54.6319
51.6463
57.9838
83.3700
54951478857115
2.6270
anovak-vgINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
63.8608
71.3629
57.7860
51.0477
466187783572499
87.2378
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.2339
99.3295
95.2250
57.6340
114077711407572562
98.2517
jlack-gatkINDELI1_5HG002compoundhet*
93.1060
91.1379
95.1609
67.4017
11261109511268573557
97.2077
gduggal-snapfbSNP*map_l150_m0_e0*
94.8356
94.4731
95.2010
82.0124
1136766511367573270
47.1204