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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
81501-81550 / 86044 show all
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0520
97.3439
98.7704
57.5661
42184115142011523468
89.4837
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
73.2107
79.5963
67.7737
81.2197
110428311025244
0.7634
jmaeng-gatkSNPtvmap_l100_m2_e0het
91.4492
87.0444
96.3236
84.5266
1373320441372952414
2.6718
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5824
98.9009
98.2659
73.3042
3014533529694524432
82.4427
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5824
98.9009
98.2659
73.3042
3014533529694524432
82.4427
gduggal-snapvardINDEL*map_l100_m0_e0*
85.1994
91.0429
80.0608
87.9508
14231402108525180
34.2857
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
78.4796
67.4314
93.8575
34.5759
299814488022525510
97.1429
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
64.9197
98.0276
48.5294
92.7910
4971049552534
6.4762
mlin-fermikitINDELI16_PLUS*het
86.1646
90.3606
82.3411
68.6094
24562622448525508
96.7619
jmaeng-gatkSNPtvmap_l100_m2_e1het
91.5298
87.1628
96.3575
84.5264
1389220461388852514
2.6667
eyeh-varpipeSNPtvmap_l150_m1_e0het
96.1715
99.6977
92.8862
79.2854
692521685552511
2.0952
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
93.9702
92.4431
95.5486
30.3243
126010311269525504
96.0000
gduggal-bwavardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.2565
97.5239
96.9905
69.1218
1713343516952526189
35.9316
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_diTR_11to50het
90.3835
96.3083
85.1454
76.8607
297411430155262
0.3802
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8898
99.3274
96.4931
80.2111
14473981447352628
5.3232
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8898
99.3274
96.4931
80.2111
14473981447352628
5.3232
jmaeng-gatkSNPtvmap_l100_m2_e0*
88.3689
80.8253
97.4657
81.7790
2023348002022952616
3.0418
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6217
99.0631
98.1843
79.0142
284432692844352629
5.5133
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6217
99.0631
98.1843
79.0142
284432692844352629
5.5133
rpoplin-dv42INDELD6_15**
97.4536
96.9493
97.9633
52.8335
2529679625300526501
95.2471
qzeng-customSNPtvHG002complexvar*
99.0948
98.4189
99.7800
23.2771
2422633892238613526243
46.1977
raldana-dualsentieonINDEL*HG002compoundhethet
83.9323
82.2912
85.6402
78.9688
33697253137526520
98.8593
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
91.7959
97.7681
86.5114
40.4602
337377338052726
4.9336
ciseli-customSNPtvmap_l150_m0_e0het
67.3971
60.2533
76.4627
88.5079
17131130171252718
3.4156
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200het
58.5210
78.7755
46.5517
55.0388
386104459527522
99.0512
jmaeng-gatkSNPtvmap_l100_m2_e1*
88.4662
80.9714
97.4899
81.7669
2047248112046852716
3.0361
jpowers-varprowlINDEL*map_siren*
91.5569
90.4453
92.6961
81.8403
67027086701528440
83.3333
ckim-dragenSNPtisegduphet
97.7495
99.7922
95.7888
93.1126
1200525120105285
0.9470
ciseli-customINDEL*map_l100_m2_e0het
73.2740
70.9580
75.7464
88.9861
16376701649528311
58.9015
gduggal-snapplatSNPti*homalt
99.4971
99.0644
99.9337
17.3977
7955267513795327528217
41.0985
gduggal-snapvardSNPtimap_l250_m0_e0het
74.2218
92.7195
61.8773
94.8028
8666885752816
3.0303
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
46.7522
70.4861
34.9754
65.3140
2038528452866
12.5000
bgallagher-sentieonSNP*map_l100_m2_e0*
99.4275
99.5674
99.2880
67.0766
736443207363352881
15.3409
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200het
62.6355
82.0408
50.6542
55.8581
40288542528513
97.1591
ckim-isaacINDELI6_15HG002compoundhethet
32.8633
69.2308
21.5453
64.8197
14464145528493
93.3712
ckim-dragenINDELI1_5*het
99.4703
99.6091
99.3319
60.8221
7873230978650529129
24.3856
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.6744
98.6011
87.4197
85.5642
408858367652943
8.1285
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.1127
99.7563
96.5225
56.9760
147343614683529422
79.7732
gduggal-bwaplatINDEL**hetalt
82.4487
71.6091
97.1551
71.6669
18072716518066529513
96.9754
bgallagher-sentieonSNP*map_l100_m2_e1*
99.4314
99.5705
99.2927
67.0857
744163217440553081
15.2830
bgallagher-sentieonINDELD1_5**
99.5437
99.4494
99.6383
60.2111
145937808145993530397
74.9057
jpowers-varprowlSNPtvmap_l100_m2_e0het
96.9118
97.1668
96.6583
76.0137
1533044715330530100
18.8679
qzeng-customSNPtimap_l125_m2_e0*
83.2073
72.4998
97.6254
82.9474
21937832121790530441
83.2075
qzeng-customINDEL*HG002complexvarhomalt
98.4127
98.7679
98.0601
51.6191
2669433326841531325
61.2053
ckim-gatkSNP*map_l150_m2_e0het
84.9182
75.7364
96.6335
90.2699
1524848851524253141
7.7213
ciseli-customSNP*map_l250_m0_e0*
67.3632
63.4660
71.7703
95.4310
1355780135053199
18.6441
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
55.7555
54.6245
56.9343
95.0071
69157470253151
9.6045
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
60.5664
45.6229
90.0673
45.8084
477956964815531472
88.8889
gduggal-snapplatSNPtvmap_l150_m1_e0het
91.7565
91.2612
92.2573
87.5714
63396076339532282
53.0075
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
33.0811
28.3279
39.7508
61.8410
349883351532502
94.3609