PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81351-81400 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | * | 99.3531 | 99.7211 | 98.9878 | 69.0049 | 49347 | 138 | 48410 | 495 | 32 | 6.4647 | |
| gduggal-bwavard | INDEL | C1_5 | * | het | 77.2653 | 88.8889 | 68.3301 | 92.9553 | 8 | 1 | 1068 | 495 | 105 | 21.2121 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.7383 | 75.0311 | 78.5249 | 51.9191 | 1809 | 602 | 1810 | 495 | 467 | 94.3434 | |
| egarrison-hhga | INDEL | I6_15 | * | * | 96.6680 | 95.4155 | 97.9538 | 47.3697 | 23685 | 1138 | 23696 | 495 | 388 | 78.3838 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | * | 88.3659 | 80.7254 | 97.6039 | 81.5961 | 20208 | 4825 | 20204 | 496 | 17 | 3.4274 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4609 | 80.8686 | 97.6264 | 81.5863 | 20446 | 4837 | 20442 | 497 | 17 | 3.4205 | |
| ckim-dragen | SNP | ti | map_l150_m2_e1 | het | 97.5046 | 98.7630 | 96.2780 | 81.6768 | 12854 | 161 | 12856 | 497 | 54 | 10.8652 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.3637 | 98.3285 | 94.4759 | 62.6464 | 9530 | 162 | 8500 | 497 | 105 | 21.1268 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 50.5691 | 51.7504 | 49.4405 | 81.2333 | 340 | 317 | 486 | 497 | 6 | 1.2072 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | * | 94.3407 | 98.0299 | 90.9191 | 92.8360 | 4976 | 100 | 4976 | 497 | 46 | 9.2555 | |
| mlin-fermikit | INDEL | D16_PLUS | * | het | 88.5250 | 92.6242 | 84.7733 | 71.4486 | 2926 | 233 | 2767 | 497 | 415 | 83.5010 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | * | 99.3627 | 99.3970 | 99.3284 | 65.5143 | 73518 | 446 | 73507 | 497 | 23 | 4.6278 | |
| gduggal-snapplat | INDEL | D1_5 | HG002compoundhet | hetalt | 57.5062 | 42.2964 | 89.7972 | 79.0515 | 4321 | 5895 | 4383 | 498 | 424 | 85.1406 | |
| gduggal-snapvard | SNP | ti | * | homalt | 99.4493 | 98.9663 | 99.9370 | 16.0694 | 794738 | 8301 | 790421 | 498 | 326 | 65.4618 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7785 | 99.2790 | 98.2829 | 78.8740 | 28505 | 207 | 28505 | 498 | 33 | 6.6265 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7785 | 99.2790 | 98.2829 | 78.8740 | 28505 | 207 | 28505 | 498 | 33 | 6.6265 | |
| gduggal-bwavard | INDEL | C1_5 | * | * | 78.1282 | 80.0000 | 76.3420 | 92.2396 | 8 | 2 | 1607 | 498 | 106 | 21.2851 | |
| eyeh-varpipe | SNP | tv | segdup | * | 97.0429 | 99.8476 | 94.3914 | 91.6933 | 8519 | 13 | 8398 | 499 | 11 | 2.2044 | |
| rpoplin-dv42 | INDEL | D1_5 | * | het | 99.5696 | 99.7077 | 99.4320 | 57.4420 | 87318 | 256 | 87348 | 499 | 434 | 86.9739 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.3478 | 97.8970 | 92.9280 | 84.6485 | 6517 | 140 | 6557 | 499 | 142 | 28.4569 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.9522 | 65.2228 | 85.3794 | 65.4520 | 2635 | 1405 | 2914 | 499 | 370 | 74.1483 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.7835 | 20.7451 | 37.7805 | 22.4371 | 245 | 936 | 303 | 499 | 460 | 92.1844 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 45.0912 | 56.0811 | 37.7029 | 22.3084 | 83 | 65 | 302 | 499 | 460 | 92.1844 | |
| jlack-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 11.0517 | 100.0000 | 5.8491 | 57.0502 | 31 | 0 | 31 | 499 | 497 | 99.5992 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9358 | 97.0774 | 98.8095 | 45.2536 | 31057 | 935 | 41417 | 499 | 447 | 89.5792 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6951 | 91.3730 | 96.1384 | 58.0455 | 9204 | 869 | 12448 | 500 | 431 | 86.2000 | |
| ckim-vqsr | INDEL | I1_5 | * | * | 99.3579 | 99.0515 | 99.6662 | 59.3791 | 149235 | 1429 | 149282 | 500 | 397 | 79.4000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.4714 | 18.6688 | 31.6005 | 60.9925 | 230 | 1002 | 231 | 500 | 487 | 97.4000 | |
| mlin-fermikit | INDEL | * | map_siren | * | 83.8340 | 77.0310 | 91.9549 | 78.2144 | 5708 | 1702 | 5715 | 500 | 406 | 81.2000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 28.4088 | 28.0519 | 28.7749 | 80.0908 | 108 | 277 | 202 | 500 | 107 | 21.4000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 45.2707 | 43.8743 | 46.7588 | 85.7511 | 419 | 536 | 440 | 501 | 11 | 2.1956 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | * | 95.6186 | 97.4255 | 93.8776 | 91.4090 | 7682 | 203 | 7682 | 501 | 87 | 17.3653 | |
| ckim-dragen | INDEL | D1_5 | * | het | 99.5957 | 99.7625 | 99.4294 | 59.4097 | 87366 | 208 | 87308 | 501 | 64 | 12.7745 | |
| ckim-dragen | SNP | ti | map_l100_m0_e0 | het | 97.6691 | 98.8629 | 96.5038 | 74.2830 | 13824 | 159 | 13829 | 501 | 46 | 9.1816 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 69.0871 | 73.4873 | 65.1842 | 73.1680 | 923 | 333 | 938 | 501 | 130 | 25.9481 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.4770 | 91.1661 | 45.2459 | 46.8023 | 258 | 25 | 414 | 501 | 450 | 89.8204 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8427 | 98.3427 | 99.3479 | 69.0114 | 47471 | 800 | 76325 | 501 | 389 | 77.6447 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 28.9696 | 23.8776 | 36.8222 | 43.6389 | 117 | 373 | 292 | 501 | 425 | 84.8303 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | het | 94.4053 | 97.9293 | 91.1260 | 92.3124 | 5155 | 109 | 5155 | 502 | 85 | 16.9323 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.8856 | 96.9499 | 89.1483 | 74.7503 | 4164 | 131 | 4124 | 502 | 11 | 2.1912 | |
| ciseli-custom | INDEL | D1_5 | map_siren | * | 83.6317 | 82.1196 | 85.2005 | 84.5008 | 2898 | 631 | 2890 | 502 | 233 | 46.4143 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 52.6084 | 47.9255 | 58.3056 | 39.7096 | 566 | 615 | 702 | 502 | 328 | 65.3386 | |
| jpowers-varprowl | SNP | ti | segdup | * | 98.3696 | 99.2783 | 97.4774 | 91.2225 | 19396 | 141 | 19398 | 502 | 38 | 7.5697 | |
| jpowers-varprowl | SNP | tv | map_l100_m1_e0 | het | 96.9444 | 97.1330 | 96.7565 | 74.5209 | 14975 | 442 | 14975 | 502 | 99 | 19.7211 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.7782 | 64.6063 | 83.3167 | 68.8822 | 2519 | 1380 | 2512 | 503 | 427 | 84.8907 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | het | 92.3125 | 91.6921 | 92.9413 | 85.1008 | 6622 | 600 | 6623 | 503 | 271 | 53.8767 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 41.6309 | 53.2787 | 34.1623 | 32.5088 | 260 | 228 | 261 | 503 | 475 | 94.4334 | |
| eyeh-varpipe | SNP | ti | HG002complexvar | het | 99.8630 | 99.8948 | 99.8311 | 17.2379 | 314435 | 331 | 297366 | 503 | 109 | 21.6700 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | het | 96.3773 | 93.9496 | 98.9337 | 53.9146 | 43416 | 2796 | 46670 | 503 | 367 | 72.9622 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.9732 | 95.9483 | 76.2512 | 71.1719 | 1634 | 69 | 1615 | 503 | 405 | 80.5169 | |