PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
81251-81300 / 86044 show all
eyeh-varpipeSNP*map_l150_m0_e0het
96.6790
99.4207
94.0844
84.2276
789446766648211
2.2822
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
65.6349
65.9236
65.3487
72.3679
82842890948271
14.7303
astatham-gatkINDEL*HG002compoundhethet
93.2853
98.3879
88.6859
79.4067
4028663786483475
98.3437
hfeng-pmm1INDEL*HG002compoundhethomalt
73.5533
99.1254
58.4695
77.3735
6806680483480
99.3789
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.0578
34.1432
70.7450
74.8821
132125481168483147
30.4348
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9638
97.4619
98.4709
54.8834
3118081231104483468
96.8944
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
74.7354
78.9833
70.9211
58.2978
10412771178483222
45.9627
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.5286
73.7548
88.6726
69.8081
368713123781483366
75.7764
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.5286
73.7548
88.6726
69.8081
368713123781483366
75.7764
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
81.3153
78.8474
83.9428
62.4516
25316792525483481
99.5859
mlin-fermikitINDELI6_15*homalt
94.2236
95.9609
92.5481
47.3706
59872526011484481
99.3802
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.0855
97.5186
98.6590
52.4830
3568490835608484451
93.1818
gduggal-snapfbSNPtimap_l125_m0_e0het
95.0321
95.8369
94.2408
72.9383
79193447920484255
52.6860
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.3224
95.8089
92.8813
84.3204
6378279631548493
19.2149
gduggal-bwafbINDELI6_15*homalt
93.3335
94.2940
92.3923
40.2909
58833565878484482
99.5868
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
73.5605
66.5605
82.2059
36.1952
6273152236484477
98.5537
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.2696
97.9874
96.5623
64.0273
1226925213595484266
54.9587
anovak-vgINDEL*segduphomalt
76.7205
93.1250
65.2299
92.3073
89466908484445
91.9421
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
96.6577
96.6080
96.7075
54.0122
1426950114216484156
32.2314
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
97.7311
98.5279
96.9471
62.1515
1552823215370484412
85.1240
ciseli-customSNPtvmap_l250_m2_e0het
60.1108
53.7113
68.2415
93.5631
1042898104048421
4.3388
raldana-dualsentieonSNP*map_l100_m2_e1het
99.0916
99.2132
98.9703
68.3138
46529369465184847
1.4463
anovak-vgINDELD1_5map_siren*
87.4723
88.4103
86.5539
80.0641
31204093122485188
38.7629
bgallagher-sentieonSNP*map_l100_m1_e0het
99.2217
99.5084
98.9366
68.7750
451362234512548563
12.9897
mlin-fermikitSNP*map_l250_m1_e0homalt
51.7475
41.7783
67.9657
72.7453
102914341029485445
91.7526
mlin-fermikitINDELD1_5HG002complexvarhomalt
96.1786
96.9145
95.4537
57.9255
1027132710183485469
96.7010
qzeng-customSNP*HG002complexvarhomalt
99.2256
98.6350
99.8233
20.2251
2846363939274538486380
78.1893
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
50.4202
43.0804
60.7748
52.4011
7721020753486332
68.3128
gduggal-snapplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
83.5589
88.9822
78.7587
90.6848
1801223180248614
2.8807
eyeh-varpipeSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
91.4663
98.5411
85.3394
78.6638
297244282948615
3.0864
cchapple-customSNPtvmap_l100_m0_e0*
96.3944
97.1220
95.6777
73.2738
107653191075848683
17.0782
cchapple-customSNPtvmap_l100_m0_e0het
95.4613
97.4522
93.5501
77.1681
7038184704948683
17.0782
ckim-dragenSNPtvmap_l100_m1_e0*
98.6576
99.2817
98.0414
69.3325
243251762432848645
9.2593
egarrison-hhgaINDELD1_5HG002complexvarhet
97.8863
98.0978
97.6758
52.4481
2037039520424486392
80.6584
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9489
97.2165
98.6923
51.4779
36847105536679486451
92.7984
jlack-gatkSNPtimap_l250_m2_e0het
92.2213
98.3712
86.7950
94.0302
320153320148740
8.2136
ckim-dragenSNPtimap_l150_m2_e0het
97.5203
98.7579
96.3134
81.5763
127211601272348752
10.6776
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
77.6749
97.5930
64.5091
70.4237
892228874881
0.2049
ciseli-customSNPtvmap_l250_m2_e1het
60.2121
53.7913
68.3733
93.6004
1057908105548821
4.3033
raldana-dualsentieonSNP*map_l100_m1_e0*
99.3579
99.3895
99.3263
63.6563
719614427195048823
4.7131
jpowers-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.5573
99.8218
95.3932
57.7564
100841810105488257
52.6639
jpowers-varprowlSNPtimap_l125_m2_e0*
97.7706
97.1809
98.3675
76.0737
2940585329405488165
33.8115
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.2920
98.4666
96.1450
64.1784
1232919212171488413
84.6311
dgrover-gatkINDELI1_5**
99.5294
99.3841
99.6753
59.0782
149736928149786488385
78.8934
ckim-dragenINDELI6_15**
97.2249
96.4630
97.9990
52.8733
2394587823949489448
91.6155
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.2987
96.2828
98.3362
70.4045
29347113328902489430
87.9346
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.2987
96.2828
98.3362
70.4045
29347113328902489430
87.9346
ndellapenna-hhgaSNP*HG002complexvar*
99.7910
99.6474
99.9350
18.9550
7517212660751769489351
71.7791
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.3323
99.0070
93.7984
50.0158
737874739648975
15.3374
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8021
99.7736
95.9069
61.4948
114582611458489478
97.7505