PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
80951-81000 / 86044 show all
gduggal-snapfbSNPtvmap_l150_m2_e1het
95.8395
97.4959
94.2384
77.2735
71641847164438174
39.7260
gduggal-bwaplatSNPtimap_sirenhet
92.8447
87.2527
99.2026
72.7353
54430795254492438111
25.3425
jpowers-varprowlINDELI1_5HG002complexvarhomalt
96.2923
95.8879
96.7001
41.8106
1289555312835438379
86.5297
jmaeng-gatkSNPtimap_l125_m2_e0het
88.8720
81.8288
97.2418
86.9822
1544634301544243839
8.9041
qzeng-customSNP*map_l150_m0_e0het
75.9917
64.6851
92.0882
93.9068
513628045098438367
83.7900
mlin-fermikitINDELI1_5HG002complexvarhet
96.6423
95.7777
97.5227
51.7717
1742176817282439429
97.7221
gduggal-snapfbSNP**hetalt
79.7614
99.7704
66.4373
62.1965
869286943929
6.6059
gduggal-snapfbSNPtv*hetalt
79.7614
99.7704
66.4373
62.1965
869286943929
6.6059
gduggal-snapfbINDELD1_5HG002complexvarhomalt
96.3093
96.7164
95.9056
58.3612
1025034810283439309
70.3872
ghariani-varprowlINDEL*map_l100_m2_e1het
90.4724
98.0794
83.9605
89.9843
2298452298439207
47.1526
ckim-isaacSNPtvHG002compoundhet*
85.3990
78.0567
94.2659
45.8825
696519587217439382
87.0159
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
58.4075
59.7906
57.0870
76.5044
571384584439331
75.3986
anovak-vgINDEL*map_l150_m2_e0*
72.9602
74.8580
71.1564
90.5195
10543541083439234
53.3030
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
27.1461
25.0340
29.6474
55.0756
184551185439435
99.0888
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
37.1546
81.6568
24.0484
55.6068
13831139439435
99.0888
eyeh-varpipeINDELI1_5HG002complexvarhomalt
96.6684
96.6984
96.6384
45.8931
1300444412649440434
98.6364
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
71.6109
63.4771
82.1356
31.7350
4712712023440436
99.0909
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
78.6349
78.0148
79.2648
83.6794
16824741682440405
92.0455
hfeng-pmm1SNPti**
99.9548
99.9307
99.9789
16.7547
20840651446208400744067
15.2273
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
jmaeng-gatkSNPtimap_l125_m2_e0*
85.0261
75.0281
98.0984
84.6739
2270275562269844041
9.3182
jmaeng-gatkSNPtimap_l125_m2_e1het
88.9909
82.0139
97.2654
86.9813
1565434331565044039
8.8636
gduggal-bwavardSNP*lowcmp_SimpleRepeat_quadTR_11to50het
97.1225
98.0932
96.1709
56.3915
1121521811076441100
22.6757
gduggal-bwafbSNPtimap_l100_m2_e0*
99.1045
99.1095
99.0994
68.4259
4852543648527441108
24.4898
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2176
96.6110
97.8319
41.8109
1989869819899441420
95.2381
ghariani-varprowlINDEL*map_l100_m1_e0*
90.4036
92.6380
88.2744
91.8947
33222643320441203
46.0317
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
78.8022
96.7658
66.4639
76.6264
74825874441259
58.7302
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
48.9473
54.4444
44.4584
86.7689
34328735344111
2.4943
jmaeng-gatkSNPtimap_l125_m2_e1*
85.1656
75.2364
98.1141
84.6685
2299975702299544241
9.2760
jpowers-varprowlSNP*map_l150_m0_e0*
95.7982
95.3125
96.2888
84.7317
1146856411468442141
31.9005
jpowers-varprowlSNPtvmap_l125_m2_e0*
97.1791
97.0465
97.3121
78.1370
1600248716002442119
26.9231
ckim-gatkSNP*segdup*
98.8880
99.3409
98.4392
93.5811
278821852787644214
3.1674
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
qzeng-customINDEL*map_sirenhet
88.2436
85.8917
90.7279
86.0479
3872636432544293
21.0407
qzeng-customINDEL*map_l100_m2_e1*
84.2732
79.4995
89.6568
87.9718
2986770384044369
15.5756
qzeng-customSNPtimap_l150_m1_e0*
79.6789
67.7202
96.7669
86.5194
13349636313259443380
85.7788
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
33.4409
22.7870
62.8044
47.2074
260881748443442
99.7743
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
68.1726
72.6852
64.1876
28.7853
15759794443440
99.3228
ciseli-customSNPtvmap_l100_m0_e0homalt
86.8291
85.5694
88.1265
64.0732
32915553288443348
78.5553
anovak-vgINDELI1_5map_l100_m1_e0homalt
67.3385
92.8571
52.8222
77.1699
48137496443416
93.9052
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
73.4008
67.1988
80.8639
50.5130
18529041872443412
93.0023
gduggal-snapvardINDELC1_5lowcmp_SimpleRepeat_diTR_11to50het
0.0000
0.0000
39.4270
89.8476
0028944484
18.9189
jpowers-varprowlSNPtvmap_l125_m2_e1*
97.1894
97.0523
97.3269
78.1843
1616649116166444120
27.0270
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6356
99.6862
97.6069
67.4063
181095718109444421
94.8198
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6356
99.6862
97.6069
67.4063
181095718109444421
94.8198
gduggal-bwafbSNP*lowcmp_SimpleRepeat_diTR_11to50het
95.8251
98.5087
93.2839
75.9171
6143936167444105
23.6486
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50het
88.9790
96.7259
82.3810
40.2277
20687020764444
0.9009
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
62.8725
52.4099
78.5542
50.1920
10339381630445427
95.9551