PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
80801-80850 / 86044 show all
hfeng-pmm2SNP*map_sirenhet
99.5406
99.5406
99.5405
57.6094
905734189055941833
7.8947
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
60.9836
60.0000
62.0000
58.6311
603402682418306
73.2057
bgallagher-sentieonINDELI1_5HG002compoundhet*
95.0768
93.6792
96.5167
65.8897
1157578111582418416
99.5215
ciseli-customSNP*map_l250_m2_e0homalt
80.9434
78.5927
83.4390
87.8922
21115752106418300
71.7703
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
78.7997
96.7251
66.4796
66.7555
827288294183
0.7177
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
69.8290
73.2103
66.7462
59.7115
992363839418413
98.8038
gduggal-bwafbSNP*map_l100_m0_e0het
98.3117
98.5852
98.0398
73.2020
209053002090641897
23.2057
ckim-dragenINDELD6_15HG002compoundhet*
94.6830
94.0760
95.2979
36.3455
84965358492419416
99.2840
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
48.1114
83.3977
33.8073
56.3749
21643214419397
94.7494
rpoplin-dv42INDELD6_15HG002compoundhet*
94.2413
93.2455
95.2586
34.8015
84216108418419413
98.5680
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
76.4099
73.8404
79.1646
73.0862
15925641592419404
96.4200
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.6735
97.5949
84.6689
62.9273
2313572314419412
98.3294
qzeng-customSNPtimap_l100_m0_e0het
81.5587
70.9290
95.9360
86.8580
991840659891419349
83.2936
qzeng-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
82.9227
78.1124
88.3643
60.1791
31128723182419327
78.0430
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
82.3222
88.6547
76.8340
52.5393
14301831393420417
99.2857
gduggal-bwafbSNP*map_l150_m2_e0*
98.6575
98.6343
98.6808
78.1008
3141743531417420107
25.4762
gduggal-bwafbSNPtimap_l100_m2_e0het
98.8152
98.9975
98.6336
70.5993
303153073031742095
22.6190
jlack-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
95.6256
99.8294
91.7615
43.4184
4681846784201
0.2381
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
82.5839
81.3183
83.8895
82.0997
21594962187420360
85.7143
gduggal-bwafbSNPtvHG002complexvar*
99.7871
99.7453
99.8289
23.3366
245528627245605421174
41.3302
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
73.9166
60.1605
95.8284
81.8541
967264059671421148
35.1544
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
73.9166
60.1605
95.8284
81.8541
967264059671421148
35.1544
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
47.8252
42.6757
54.3879
44.5978
504677502421421
100.0000
qzeng-customSNP*segdup*
98.6778
98.8634
98.4928
92.2719
277483192751242168
16.1520
raldana-dualsentieonINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.2233
91.0156
95.5407
66.1212
91689059020421396
94.0618
ckim-gatkSNPtimap_l125_m2_e0*
85.0542
75.0248
98.1789
84.5122
2270175572269742145
10.6888
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0051
99.4671
98.5473
71.4531
285591532855942123
5.4632
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0051
99.4671
98.5473
71.4531
285591532855942123
5.4632
asubramanian-gatkINDELI6_15HG002compoundhet*
93.0480
91.1691
95.0059
37.8731
80017758009421405
96.1995
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
37.1767
79.2899
24.2806
53.7438
13435135421420
99.7625
jmaeng-gatkSNPtimap_l125_m1_e0het
88.5520
81.2876
97.2421
86.2223
1484834181484442139
9.2637
ckim-gatkSNPtimap_l125_m2_e1*
85.1950
75.2331
98.1978
84.5085
2299875712299442245
10.6635
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.7796
66.9983
82.0883
30.1926
4041991934422418
99.0521
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
80.5518
94.6809
70.0921
54.5132
44525989422322
76.3033
gduggal-snapplatSNP*map_l250_m2_e0het
87.7154
84.4628
91.2284
94.8727
43878074389422202
47.8673
ndellapenna-hhgaSNPtv*het
99.8309
99.7335
99.9285
20.7977
590119157759013842245
10.6635
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.6952
95.8752
97.5293
67.9232
1708473516698423393
92.9078
gduggal-snapplatINDELD6_15*homalt
55.1666
41.1476
83.6743
63.6351
260337232168423248
58.6288
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
40.5092
55.2023
31.9936
87.5351
1911551994234
0.9456
gduggal-snapvardINDELD1_5map_l100_m2_e0*
89.1114
94.4125
84.3738
85.7309
18081072284423173
40.8983
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
44.4338
30.6874
80.4889
73.3333
175939731745423294
69.5035
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200het
33.7717
31.2245
36.7713
63.1405
153337246423326
77.0686
jmaeng-gatkINDELI6_15**
97.3971
96.5435
98.2659
53.3907
2396585823970423364
86.0520
jmaeng-gatkSNPtimap_l125_m1_e0*
84.6118
74.3855
98.0980
83.7120
2182175142181742341
9.6927
gduggal-bwafbSNP*map_l150_m2_e1*
98.6663
98.6464
98.6862
78.1729
3177443631774423108
25.5319
gduggal-bwavardINDELI16_PLUSHG002complexvar*
64.0905
62.4141
65.8596
60.8283
817492816423292
69.0307
bgallagher-sentieonSNP*map_l125_m2_e0*
99.2735
99.4499
99.0978
72.9518
464662574646042370
16.5485
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
88.7047
91.7202
85.8812
83.6926
24262192573423179
42.3168
jlack-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
97.1720
99.8658
94.6197
41.0468
74421074394234
0.9456
raldana-dualsentieonSNP*map_l125_m2_e0*
99.1550
99.2145
99.0956
71.3320
463563674635042315
3.5461