PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80501-80550 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.3614 | 99.5206 | 93.3967 | 80.5951 | 5397 | 26 | 5403 | 382 | 170 | 44.5026 | |
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | homalt | 95.9196 | 95.4992 | 96.3438 | 51.1776 | 10121 | 477 | 10066 | 382 | 245 | 64.1361 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 63.0485 | 48.1459 | 91.3123 | 63.3492 | 4025 | 4335 | 4015 | 382 | 317 | 82.9843 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 63.0485 | 48.1459 | 91.3123 | 63.3492 | 4025 | 4335 | 4015 | 382 | 317 | 82.9843 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.7902 | 69.7674 | 52.3096 | 34.3980 | 420 | 182 | 419 | 382 | 382 | 100.0000 | |
| ckim-isaac | INDEL | * | HG002compoundhet | homalt | 60.3591 | 67.2012 | 54.7816 | 76.0328 | 461 | 225 | 464 | 383 | 372 | 97.1279 | |
| ciseli-custom | SNP | tv | func_cds | het | 92.8964 | 99.2473 | 87.3095 | 32.0576 | 2637 | 20 | 2635 | 383 | 2 | 0.5222 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 82.8282 | 98.9485 | 71.2246 | 86.5324 | 941 | 10 | 948 | 383 | 192 | 50.1305 | |
| jpowers-varprowl | SNP | ti | map_l100_m0_e0 | het | 96.5732 | 95.9308 | 97.2242 | 76.0435 | 13414 | 569 | 13415 | 383 | 137 | 35.7702 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.4770 | 96.4561 | 94.5176 | 45.8743 | 6505 | 239 | 6603 | 383 | 170 | 44.3864 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | het | 94.2359 | 95.6873 | 92.8278 | 87.5230 | 4970 | 224 | 4970 | 384 | 172 | 44.7917 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.5049 | 98.6984 | 81.8782 | 76.1990 | 1744 | 23 | 1735 | 384 | 49 | 12.7604 | |
| gduggal-bwavard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.9826 | 95.8648 | 92.1728 | 78.1956 | 4567 | 197 | 4522 | 384 | 48 | 12.5000 | |
| ndellapenna-hhga | INDEL | D6_15 | * | homalt | 95.9125 | 97.7395 | 94.1526 | 53.1263 | 6183 | 143 | 6183 | 384 | 166 | 43.2292 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | * | 97.2860 | 96.5605 | 98.0225 | 78.7128 | 19034 | 678 | 19034 | 384 | 140 | 36.4583 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | het | 87.8827 | 81.2376 | 95.7119 | 88.2796 | 8573 | 1980 | 8571 | 384 | 13 | 3.3854 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.5507 | 87.9777 | 74.2800 | 74.5872 | 1105 | 151 | 1109 | 384 | 374 | 97.3958 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.3678 | 98.7956 | 95.9807 | 75.1838 | 9023 | 110 | 9170 | 384 | 8 | 2.0833 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.3678 | 98.7956 | 95.9807 | 75.1838 | 9023 | 110 | 9170 | 384 | 8 | 2.0833 | |
| rpoplin-dv42 | SNP | tv | * | * | 99.9512 | 99.9420 | 99.9604 | 21.8980 | 969128 | 562 | 969027 | 384 | 163 | 42.4479 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.4071 | 84.2391 | 93.0089 | 52.2708 | 5115 | 957 | 5122 | 385 | 278 | 72.2078 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 83.6913 | 86.7444 | 80.8458 | 71.7974 | 1636 | 250 | 1625 | 385 | 278 | 72.2078 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.9719 | 99.1684 | 98.7761 | 70.4653 | 30884 | 259 | 31073 | 385 | 49 | 12.7273 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9719 | 99.1684 | 98.7761 | 70.4653 | 30884 | 259 | 31073 | 385 | 49 | 12.7273 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1423 | 98.9601 | 97.3379 | 67.2353 | 14465 | 152 | 14077 | 385 | 358 | 92.9870 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6906 | 99.4825 | 97.9112 | 60.8903 | 18072 | 94 | 18047 | 385 | 366 | 95.0649 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6906 | 99.4825 | 97.9112 | 60.8903 | 18072 | 94 | 18047 | 385 | 366 | 95.0649 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | het | 88.8718 | 97.2020 | 81.8567 | 93.7753 | 1737 | 50 | 1737 | 385 | 18 | 4.6753 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | * | 84.0047 | 74.0950 | 96.9745 | 86.2788 | 12342 | 4315 | 12340 | 385 | 14 | 3.6364 | |
| jli-custom | SNP | * | map_siren | het | 99.5222 | 99.4681 | 99.5764 | 53.8949 | 90507 | 484 | 90501 | 385 | 76 | 19.7403 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.6086 | 96.6584 | 94.5813 | 87.2366 | 6653 | 230 | 6720 | 385 | 17 | 4.4156 | |
| egarrison-hhga | INDEL | D16_PLUS | * | * | 85.6324 | 79.0831 | 93.3644 | 63.5644 | 5365 | 1419 | 5417 | 385 | 330 | 85.7143 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0020 | 98.6553 | 99.3511 | 53.3614 | 27880 | 380 | 59096 | 386 | 365 | 94.5596 | |
| gduggal-snapfb | SNP | * | segdup | het | 98.5769 | 99.3590 | 97.8069 | 92.1233 | 17206 | 111 | 17215 | 386 | 16 | 4.1451 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.3623 | 98.6138 | 92.3184 | 52.1702 | 4624 | 65 | 4639 | 386 | 5 | 1.2953 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | * | 90.2459 | 86.2613 | 94.6165 | 87.8341 | 6781 | 1080 | 6784 | 386 | 225 | 58.2902 | |
| rpoplin-dv42 | SNP | * | map_siren | * | 99.6224 | 99.5097 | 99.7354 | 54.5067 | 145511 | 717 | 145497 | 386 | 225 | 58.2902 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 73.4486 | 61.1425 | 91.9567 | 37.2269 | 4431 | 2816 | 4413 | 386 | 340 | 88.0829 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.8405 | 91.9659 | 97.9006 | 68.3752 | 18006 | 1573 | 18000 | 386 | 15 | 3.8860 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.8405 | 91.9659 | 97.9006 | 68.3752 | 18006 | 1573 | 18000 | 386 | 15 | 3.8860 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | * | 88.2470 | 80.1862 | 98.1096 | 78.5989 | 20073 | 4960 | 20033 | 386 | 305 | 79.0155 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e0 | * | 99.5209 | 99.5633 | 99.4785 | 67.6209 | 73641 | 323 | 73630 | 386 | 47 | 12.1762 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.3761 | 95.8604 | 98.9406 | 51.0374 | 36333 | 1569 | 36144 | 387 | 350 | 90.4393 | |
| astatham-gatk | INDEL | D6_15 | * | * | 98.2985 | 98.0875 | 98.5103 | 54.9898 | 25593 | 499 | 25592 | 387 | 347 | 89.6641 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 71.0216 | 96.2525 | 56.2712 | 87.6827 | 488 | 19 | 498 | 387 | 79 | 20.4134 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2133 | 99.5848 | 98.8446 | 73.6714 | 33098 | 138 | 33109 | 387 | 353 | 91.2145 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1230 | 32.4837 | 56.0227 | 78.9373 | 497 | 1033 | 493 | 387 | 383 | 98.9664 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 41.1230 | 32.4837 | 56.0227 | 78.9373 | 497 | 1033 | 493 | 387 | 383 | 98.9664 | |
| ltrigg-rtg1 | SNP | * | map_siren | * | 99.4858 | 99.2395 | 99.7333 | 50.0979 | 145115 | 1112 | 145108 | 388 | 49 | 12.6289 | |
| hfeng-pmm2 | SNP | * | map_l100_m2_e1 | * | 99.5245 | 99.5678 | 99.4812 | 67.6245 | 74414 | 323 | 74403 | 388 | 47 | 12.1134 | |