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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
80351-80400 / 86044 show all
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
ndellapenna-hhgaINDELI1_5*het
99.3796
99.2245
99.5353
57.8169
7842861378394366178
48.6339
qzeng-customSNPtvmap_l100_m1_e0*
88.0506
79.8294
98.1596
77.4096
19559494219521366304
83.0601
mlin-fermikitINDELD16_PLUSHG002compoundhethet
55.6184
84.9383
41.3462
47.6949
34461258366363
99.1803
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50*
97.5888
98.8754
96.3352
68.5340
9583109962136621
5.7377
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50het
91.9331
99.5790
85.3775
44.4518
2129921373664
1.0929
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
76.4847
93.7931
64.5692
72.8444
40827667366206
56.2842
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
90.7380
98.6175
84.0244
38.7433
1926271925366364
99.4536
gduggal-bwafbINDELI1_5HG002complexvar*
97.5502
96.2593
98.8762
54.2720
32115124832201366326
89.0710
eyeh-varpipeSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.9250
98.8608
89.4585
75.5441
321137310636629
7.9235
gduggal-bwavardINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
62.0275
82.7982
49.5879
79.0744
36175361367274
74.6594
bgallagher-sentieonINDELI6_15HG002compoundhethomalt
14.4522
100.0000
7.7889
57.4332
31031367366
99.7275
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
76.5009
82.6944
71.1705
83.8697
755158906367155
42.2343
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.6003
96.5481
90.8273
56.5817
36361303634367158
43.0518
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.6003
96.5481
90.8273
56.5817
36361303634367158
43.0518
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
69.4883
82.5826
59.9782
80.9276
550116550367359
97.8202
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
69.4883
82.5826
59.9782
80.9276
550116550367359
97.8202
jpowers-varprowlSNP*map_l250_m2_e0het
93.5184
94.0316
93.0109
92.2727
4884310488436788
23.9782
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.7876
99.0041
85.5516
65.0041
2187222179368361
98.0978
raldana-dualsentieonINDELI6_15HG002compoundhet*
92.3351
89.3573
95.5182
36.0215
78429347843368366
99.4565
jlack-gatkINDEL*map_siren*
96.8350
98.5155
95.2108
84.4494
7300110731636836
9.7826
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.3583
99.6679
91.4059
82.1531
3902133914368228
61.9565
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7826
98.8983
96.6918
85.1220
106821191075636869
18.7500
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
92.7811
94.6932
90.9448
44.0938
571323706369326
88.3469
mlin-fermikitSNP*map_l100_m2_e0het
71.6803
56.3051
98.6068
57.9033
26125202742611736911
2.9810
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2837
99.7301
96.8787
61.7262
114533111453369356
96.4770
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.4986
87.0629
98.6582
85.3332
27114402927131369118
31.9783
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.4986
87.0629
98.6582
85.3332
27114402927131369118
31.9783
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
79.2739
93.8895
68.5957
88.9971
7995280636943
11.6531
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9428
98.4681
99.4221
74.5651
6344498763485369305
82.6558
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6082
99.8778
99.3401
60.0690
55563685555236930
8.1301
anovak-vgINDEL*map_l125_m2_e0het
71.0853
69.0870
73.2026
89.4523
9614301008369100
27.1003
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
60.2448
65.3028
55.9140
55.1447
399212468369297
80.4878
ckim-dragenSNPtvmap_l125_m1_e0*
98.3749
99.0322
97.7263
73.5955
158611551586036938
10.2981
gduggal-snapvardINDELI1_5map_sirenhet
89.5229
97.5610
82.7085
86.5938
1640411765369180
48.7805
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2937
95.6572
98.9872
51.0230
36256164636066369341
92.4119
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.1938
98.9533
97.4458
67.6938
1446415314078369346
93.7669
egarrison-hhgaINDELI6_15HG002compoundhet*
93.4351
91.3742
95.5910
34.6214
80197578022370313
84.5946
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
40.5494
35.4887
47.2934
60.0683
236429332370282
76.2162
mlin-fermikitINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
82.5487
75.1600
91.5487
63.9730
399413204008370366
98.9189
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.1497
98.3806
92.1243
67.5306
4374724328370327
88.3784
jlack-gatkSNPtvsegduphet
96.4748
99.7163
93.4374
95.6607
52721552683700
0.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.1314
98.8438
97.4291
67.5197
1444816914060371345
92.9919
jpowers-varprowlSNP*map_l250_m2_e1het
93.5587
94.0919
93.0316
92.3350
4953311495337190
24.2588
jpowers-varprowlSNPtimap_l150_m1_e0het
96.3303
95.7074
96.9615
80.9022
1183953111839371130
35.0404
ltrigg-rtg2INDEL*HG002complexvar*
98.9919
98.4780
99.5112
54.8986
75766117175523371227
61.1860
jmaeng-gatkSNPtvmap_l125_m1_e0het
87.4372
80.5254
95.6471
87.5400
81541972815237112
3.2345
gduggal-bwafbSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.3470
98.2759
88.8889
80.5601
296452296837122
5.9299
gduggal-bwavardINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
43.5803
37.0727
52.8590
78.7470
423718416371276
74.3935