PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
80201-80250 / 86044 show all
hfeng-pmm2SNP*map_l100_m2_e1het
99.3202
99.3859
99.2545
69.6861
466102884659935028
8.0000
eyeh-varpipeSNPtiHG002compoundhethet
95.2908
98.8427
91.9853
54.7039
9395110401735050
14.2857
gduggal-bwavardINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
49.7630
39.5223
67.1670
73.6334
7281114716350286
81.7143
gduggal-bwavardINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
71.5090
85.4985
61.4537
75.3529
56696558350286
81.7143
gduggal-bwavardSNPtimap_l250_m0_e0het
82.1372
96.0385
71.7514
95.4014
897378893507
2.0000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.1834
98.7146
88.2392
86.6487
261134262635041
11.7143
gduggal-bwafbSNPtvmap_l100_m2_e0*
98.8866
99.1651
98.6097
70.4745
248242092482435055
15.7143
jmaeng-gatkINDELI6_15HG002compoundhet*
93.8901
92.0123
95.8462
36.5464
80757018076350348
99.4286
ltrigg-rtg1SNP*map_sirenhet
99.2561
98.9032
99.6115
48.6936
899929988999635116
4.5584
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3728
99.7562
97.0272
61.9399
114562811456351343
97.7208
asubramanian-gatkSNP*HG002complexvarhet
98.3318
96.7914
99.9221
19.0611
4505611493645044235131
8.8319
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
75.1094
82.2222
69.1293
80.3287
592128786351146
41.5954
mlin-fermikitSNPtvmap_sirenhet
80.8694
68.7161
98.2452
51.7745
196598950196513513
0.8547
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.1128
99.3482
98.8786
72.9414
309402033094935141
11.6809
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.1128
99.3482
98.8786
72.9414
309402033094935141
11.6809
gduggal-bwafbSNPtvmap_l100_m2_e1*
98.8936
99.1694
98.6194
70.5239
250732102507335156
15.9544
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.8529
99.4937
87.0432
60.7107
2358122358351351
100.0000
eyeh-varpipeSNPtvHG002compoundhet*
97.1567
99.0474
95.3368
45.3099
883885717635178
22.2222
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.4805
97.1646
97.7985
57.9258
1559245515593351340
96.8661
rpoplin-dv42INDELI1_5HG002compoundhet*
95.3045
93.6144
97.0566
64.5995
1156778911574351345
98.2906
gduggal-snapvardINDELI16_PLUSHG002compoundhethet
6.6071
4.2553
14.7700
45.8005
24561352188
53.4091
gduggal-snapplatSNPtiHG002complexvarhomalt
99.0919
98.3790
99.8152
19.4474
1903283136190130352203
57.6705
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5883
99.8077
99.3700
59.7371
555241075552035227
7.6705
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.0536
99.7374
96.4257
55.6216
9496259496352346
98.2955
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
68.3076
76.1255
61.9459
62.5658
558175573352267
75.8523
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
24.2522
20.4082
29.8805
51.4507
150585150352340
96.5909
ciseli-customINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
29.0131
33.3333
25.6842
96.3865
1212235387
24.6459
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3687
99.7649
97.0110
61.9339
114572711457353345
97.7337
ckim-gatkSNPtvmap_l125_m2_e0het
87.7913
80.8849
95.9873
88.0575
84461996844435314
3.9660
jpowers-varprowlSNPtvmap_l150_m2_e0*
96.7549
96.6270
96.8830
81.7123
109723831097235392
26.0623
raldana-dualsentieonSNP*map_l150_m2_e1*
98.9667
99.0283
98.9052
75.6537
318973133189135312
3.3994
egarrison-hhgaINDELD6_15HG002complexvar*
89.5440
86.4579
92.8586
57.3769
45847184590353276
78.1870
ckim-vqsrINDELI6_15**
97.6524
96.7691
98.5520
52.9508
2402180224026353331
93.7677
gduggal-snapvardINDELI16_PLUSHG002compoundhet*
0.9920
0.5133
14.7343
45.8824
11213261353189
53.5411
eyeh-varpipeSNPtvmap_l150_m0_e0het
93.9083
99.6483
88.7937
84.1222
28331027973537
1.9830
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
gduggal-bwafbINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
82.8200
73.8119
94.3324
59.6824
298210585892354254
71.7514
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
44.1953
30.1465
82.7653
67.2461
172840041700354318
89.8305
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
85.6607
94.4974
78.3354
70.0293
1288751280354318
89.8305
gduggal-bwavardSNPtimap_l250_m0_e0*
86.4567
95.9854
78.6490
94.9013
131555130435410
2.8249
jpowers-varprowlSNPtvmap_l150_m2_e1*
96.7832
96.6528
96.9140
81.7370
111173851111735492
25.9887
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
63.3979
87.0324
49.8584
69.2241
34952352354346
97.7401
ciseli-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
94.7390
98.1567
91.5513
36.9925
383472383635436
10.1695
ckim-dragenSNPtvmap_l125_m1_e0het
97.6861
98.8149
96.5827
77.3870
100061201000535425
7.0622
mlin-fermikitINDEL*map_l100_m2_e1*
75.3445
66.1342
87.5352
80.6829
248412722486354273
77.1186
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
43.9656
31.1283
74.8222
59.1398
10872405105235457
16.1017
ckim-gatkSNPtvmap_l125_m2_e0*
83.8704
73.7765
97.1641
86.1398
1216543241216335514
3.9437
ckim-vqsrSNP*map_l100_m2_e0het
85.3365
74.9930
98.9898
84.8848
34796116033478835513
3.6620
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
45.8754
35.9281
63.4398
55.1086
360642616355312
87.8873