PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
80051-80100 / 86044 show all
jpowers-varprowlSNPtvmap_l100_m0_e0het
95.8224
96.2337
95.4146
78.9693
6950272695033477
23.0539
ckim-isaacINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.9979
73.8865
89.6241
43.4171
290310262885334316
94.6108
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
35.9909
40.9326
32.1138
96.9858
15822815833423
6.8862
ghariani-varprowlSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
89.0162
97.8232
81.6639
77.4026
148333149233522
6.5672
ltrigg-rtg2INDELI1_5*het
99.5106
99.4497
99.5716
56.0879
786064357786833592
27.4627
ciseli-customINDELI1_5map_l100_m2_e0*
63.6732
58.1871
70.3014
85.8912
796572793335286
85.3731
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.5257
98.5798
98.4716
73.3734
2158831121584335163
48.6567
raldana-dualsentieonSNP*map_l150_m1_e0*
98.9484
98.9905
98.9063
73.9052
303003093029433511
3.2836
raldana-dualsentieonSNP*map_l150_m2_e0het
98.5424
98.7434
98.3423
77.9851
19880253198743354
1.1940
rpoplin-dv42SNP*map_l100_m1_e0*
99.3983
99.2625
99.5346
63.1596
7186953471858336196
58.3333
mlin-fermikitINDEL*map_l100_m1_e0*
74.7799
65.3095
87.4627
78.8610
234212442344336264
78.5714
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.9908
99.7206
92.5300
66.9362
42831241623369
2.6786
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2813
99.4514
97.1385
53.8661
114216311406336321
95.5357
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
91.4497
97.5621
86.0581
72.6726
21215320743368
2.3810
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
82.2695
94.2516
72.9904
73.0327
8695390833630
8.9286
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.8280
94.9712
98.7588
48.1636
26553140626734336168
50.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1504
99.7689
96.5836
55.8513
9499229499336332
98.8095
ciseli-customINDEL*map_l100_m0_e0*
68.0279
62.5720
74.5262
89.7426
978585983336210
62.5000
jpowers-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50het
97.7673
98.4344
97.1092
52.3550
112541791128733618
5.3571
astatham-gatkINDELD6_15HG002compoundhet*
95.7191
95.2165
96.2270
36.2319
85994328595337334
99.1098
ltrigg-rtg2SNP*map_siren*
99.4570
99.1479
99.7681
47.8411
144981124614497533738
11.2760
gduggal-bwafbSNPtvmap_l100_m2_e0het
98.4689
99.0556
97.8891
72.5475
156281491562833748
14.2433
gduggal-snapfbINDEL*map_siren*
93.6644
92.0513
95.3350
81.9963
68215896887337103
30.5638
cchapple-customINDELD6_15HG002compoundhet*
95.2970
93.9320
96.7022
31.4437
84835489882337326
96.7359
gduggal-snapfbINDELI6_15HG002complexvarhet
77.1850
70.0212
85.9817
41.0929
16497062067337317
94.0653
hfeng-pmm1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9724
98.3166
99.6370
70.9510
92859159092766338265
78.4024
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
55.0977
41.6888
81.2222
64.9260
157021961462338247
73.0769
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
55.0977
41.6888
81.2222
64.9260
157021961462338247
73.0769
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.9150
98.5617
95.3224
87.1181
678499688833849
14.4970
hfeng-pmm2SNP*map_l100_m1_e0het
99.3136
99.3717
99.2555
68.4046
450742854506333828
8.2840
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1456
99.7794
96.5643
55.8438
9500219500338334
98.8166
gduggal-bwafbSNPtvmap_l100_m2_e1het
98.4812
99.0651
97.9041
72.6029
157891491578933849
14.4970
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_triTR_11to50het
90.8048
89.3111
92.3494
45.1133
32673914092339139
41.0029
ltrigg-rtg2INDELD1_5*het
99.5293
99.4473
99.6114
53.9225
870904848688933971
20.9440
mlin-fermikitSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.2599
99.8263
91.0930
68.6491
344963467339278
82.0059
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
73.3911
89.0476
62.4169
74.6344
5616956333945
13.2743
gduggal-snapfbSNPtimap_l150_m0_e0*
94.8381
94.0720
95.6168
81.0969
73954667395339181
53.3923
rpoplin-dv42SNP*map_l100_m2_e0*
99.4070
99.2740
99.5404
65.1757
7342753773416339198
58.4071
dgrover-gatkSNP*map_l100_m2_e0het
99.3701
99.4698
99.2707
71.6313
461532464614233963
18.5841
egarrison-hhgaINDELI1_5HG002compoundhet*
96.1134
95.0631
97.1871
62.4825
1174661011747340264
77.6471
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
26.8403
19.6198
42.4704
32.3024
2581057251340290
85.2941
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
35.5751
30.6061
42.4704
32.1470
101229251340290
85.2941
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
88.6006
96.8987
81.6117
67.2685
15314915093406
1.7647
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50*
94.6955
94.4156
94.9771
66.7371
63573766429340300
88.2353
qzeng-customINDELI6_15HG002complexvar*
92.2263
91.5275
92.9358
54.4267
43864064473340144
42.3529
jmaeng-gatkSNP*map_l125_m0_e0het
79.8036
68.1775
96.2100
91.1308
86344030863134027
7.9412
gduggal-bwavardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
67.8403
94.5137
52.9086
74.2327
37922382340307
90.2941
raldana-dualsentieonINDELI1_5HG002compoundhet*
94.0016
91.1217
97.0695
64.7141
11259109711262340339
99.7059
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.5773
96.2462
96.9108
49.8130
1066641610666340299
87.9412
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.6456
96.4829
98.8367
71.2472
29408107228971341255
74.7801