PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80001-80050 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D6_15 | HG002compoundhet | * | 95.5291 | 94.7736 | 96.2967 | 36.1965 | 8559 | 472 | 8555 | 329 | 326 | 99.0881 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0336 | 96.1684 | 97.9144 | 65.7408 | 15461 | 616 | 15446 | 329 | 175 | 53.1915 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.0336 | 96.1684 | 97.9144 | 65.7408 | 15461 | 616 | 15446 | 329 | 175 | 53.1915 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.3020 | 94.5490 | 92.0875 | 85.9655 | 3920 | 226 | 3829 | 329 | 86 | 26.1398 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | * | 99.2792 | 99.6596 | 98.9018 | 74.7286 | 30155 | 103 | 29629 | 329 | 21 | 6.3830 | |
| gduggal-snapplat | INDEL | * | segdup | * | 77.9673 | 71.4789 | 85.7514 | 96.5099 | 1827 | 729 | 1980 | 329 | 27 | 8.2067 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0138 | 96.9458 | 97.0818 | 54.6044 | 10951 | 345 | 10945 | 329 | 249 | 75.6839 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2554 | 96.9169 | 97.5963 | 51.8216 | 13360 | 425 | 13358 | 329 | 322 | 97.8723 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | het | 98.7760 | 99.2493 | 98.3073 | 78.6499 | 19171 | 145 | 19165 | 330 | 49 | 14.8485 | |
| rpoplin-dv42 | SNP | ti | * | het | 99.9511 | 99.9279 | 99.9742 | 18.1937 | 1280967 | 924 | 1280907 | 330 | 164 | 49.6970 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | * | 93.9555 | 91.8392 | 96.1717 | 34.6920 | 8294 | 737 | 8290 | 330 | 328 | 99.3939 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.3847 | 97.8381 | 98.9375 | 61.5106 | 30729 | 679 | 30729 | 330 | 295 | 89.3939 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.3847 | 97.8381 | 98.9375 | 61.5106 | 30729 | 679 | 30729 | 330 | 295 | 89.3939 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.3304 | 96.9158 | 97.7485 | 53.9045 | 14329 | 456 | 14327 | 330 | 320 | 96.9697 | |
| hfeng-pmm2 | SNP | * | map_l125_m1_e0 | * | 99.3629 | 99.4529 | 99.2732 | 71.9477 | 45079 | 248 | 45073 | 330 | 39 | 11.8182 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1914 | 99.7899 | 96.6433 | 56.0900 | 9501 | 20 | 9501 | 330 | 327 | 99.0909 | |
| dgrover-gatk | INDEL | D6_15 | HG002compoundhet | * | 95.8086 | 95.3161 | 96.3062 | 36.3267 | 8608 | 423 | 8604 | 330 | 327 | 99.0909 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | het | 68.7565 | 65.3184 | 72.5766 | 91.1620 | 872 | 463 | 876 | 331 | 196 | 59.2145 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | * | 69.6954 | 66.4234 | 73.3065 | 95.3499 | 910 | 460 | 909 | 331 | 59 | 17.8248 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.8920 | 97.4192 | 92.4926 | 87.6892 | 4039 | 107 | 4078 | 331 | 106 | 32.0242 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.2488 | 96.4929 | 90.2158 | 52.0822 | 3054 | 111 | 3052 | 331 | 137 | 41.3897 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.8412 | 97.4766 | 79.9394 | 76.0835 | 1352 | 35 | 1319 | 331 | 6 | 1.8127 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002complexvar | * | 75.2016 | 72.3676 | 78.2666 | 64.6225 | 1189 | 454 | 1192 | 331 | 268 | 80.9668 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | het | 98.4524 | 99.0335 | 97.8781 | 70.7160 | 15268 | 149 | 15268 | 331 | 48 | 14.5015 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | * | 99.2798 | 99.6598 | 98.9027 | 74.7802 | 30465 | 104 | 29925 | 332 | 21 | 6.3253 | |
| ckim-dragen | INDEL | D6_15 | * | homalt | 97.3161 | 99.7471 | 95.0008 | 59.2976 | 6310 | 16 | 6309 | 332 | 329 | 99.0964 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.5913 | 99.6283 | 91.8687 | 63.3516 | 3752 | 14 | 3751 | 332 | 329 | 99.0964 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.5913 | 99.6283 | 91.8687 | 63.3516 | 3752 | 14 | 3751 | 332 | 329 | 99.0964 | |
| egarrison-hhga | SNP | tv | * | het | 99.8548 | 99.7659 | 99.9438 | 20.8578 | 590311 | 1385 | 590332 | 332 | 44 | 13.2530 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.2213 | 71.4171 | 94.1457 | 64.2321 | 5322 | 2130 | 5339 | 332 | 30 | 9.0361 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | * | 95.3719 | 95.7171 | 95.0292 | 79.3444 | 6347 | 284 | 6347 | 332 | 129 | 38.8554 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | * | 79.9637 | 72.2811 | 89.4737 | 91.2096 | 2592 | 994 | 2822 | 332 | 38 | 11.4458 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.0004 | 95.5487 | 96.4564 | 45.2361 | 9037 | 421 | 9037 | 332 | 315 | 94.8795 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e0 | * | 99.3766 | 99.4649 | 99.2885 | 73.4867 | 46473 | 250 | 46467 | 333 | 39 | 11.7117 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.6327 | 96.9169 | 98.3591 | 48.8223 | 19961 | 635 | 19961 | 333 | 328 | 98.4985 | |
| ckim-gatk | INDEL | D6_15 | HG002compoundhet | * | 95.5310 | 94.8178 | 96.2551 | 36.1757 | 8563 | 468 | 8559 | 333 | 330 | 99.0991 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.3971 | 97.0646 | 97.7319 | 53.7356 | 14351 | 434 | 14349 | 333 | 323 | 96.9970 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 55.3043 | 53.2020 | 57.5796 | 52.8812 | 324 | 285 | 452 | 333 | 230 | 69.0691 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1709 | 99.7794 | 96.6134 | 55.6813 | 9500 | 21 | 9500 | 333 | 330 | 99.0991 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | * | 99.3433 | 99.3594 | 99.3272 | 64.7652 | 49168 | 317 | 49161 | 333 | 19 | 5.7057 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.7450 | 84.0340 | 98.6211 | 62.7612 | 23748 | 4512 | 23816 | 333 | 53 | 15.9159 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 37.3898 | 74.1259 | 25.0000 | 92.7864 | 106 | 37 | 111 | 333 | 7 | 2.1021 | |
| ghariani-varprowl | INDEL | D1_5 | map_siren | * | 93.0194 | 95.1544 | 90.9781 | 84.3263 | 3358 | 171 | 3358 | 333 | 117 | 35.1351 | |
| ckim-isaac | INDEL | D16_PLUS | * | het | 85.3103 | 83.3175 | 87.4007 | 59.5500 | 2632 | 527 | 2310 | 333 | 202 | 60.6607 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.5217 | 98.2474 | 96.8067 | 41.4913 | 6615 | 118 | 10095 | 333 | 84 | 25.2252 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.0789 | 89.7382 | 86.4799 | 86.3258 | 2125 | 243 | 2130 | 333 | 219 | 65.7658 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.0985 | 86.5550 | 85.6468 | 63.2965 | 1912 | 297 | 1993 | 334 | 189 | 56.5868 | |
| qzeng-custom | INDEL | * | map_l100_m1_e0 | het | 83.3456 | 79.6421 | 87.4105 | 89.3842 | 1780 | 455 | 2319 | 334 | 53 | 15.8683 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 76.3516 | 67.9439 | 87.1341 | 64.1684 | 2181 | 1029 | 2262 | 334 | 260 | 77.8443 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e1 | * | 99.3819 | 99.4704 | 99.2936 | 73.5231 | 46952 | 250 | 46946 | 334 | 39 | 11.6766 | |