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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
79851-79900 / 86044 show all
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2219
99.3862
99.0582
74.4553
3303220433027314203
64.6497
jmaeng-gatkSNPtimap_l150_m2_e1*
81.2473
69.4542
97.8644
88.4201
1439363301438931434
10.8280
jpowers-varprowlSNPtvmap_l150_m1_e0het
95.7277
95.9689
95.4878
82.3230
6666280666631575
23.8095
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
32.5779
41.6667
26.7442
96.8657
11516111531515
4.7619
gduggal-snapfbSNPtvHG002compoundhethomalt
95.1607
99.2326
91.4099
54.5488
3362263352315115
36.5079
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
85.0654
98.4227
74.9004
87.7501
93615940315251
79.6825
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.5750
99.7860
89.8811
59.7231
279862798315314
99.6825
raldana-dualsentieonSNPtimap_l100_m2_e0het
99.0553
99.1379
98.9728
67.5282
30358264303513156
1.9048
anovak-vgINDELD1_5map_l100_m1_e0*
84.4511
85.4978
83.4298
83.8652
15802681586315119
37.7778
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
66.1849
94.2197
51.0078
73.0013
32620329316307
97.1519
asubramanian-gatkINDELI6_15*homalt
97.0392
99.0223
95.1340
55.6784
6178616178316307
97.1519
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.1348
99.7788
90.9039
60.3967
315873158316314
99.3671
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
40.7567
52.0900
33.4737
59.2973
162149159316303
95.8861
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.5384
98.0960
98.9848
61.0949
3081059830810316292
92.4051
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5384
98.0960
98.9848
61.0949
3081059830810316292
92.4051
jpowers-varprowlSNPtvsegdup*
97.6941
99.0272
96.3964
93.1340
844983845331633
10.4430
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
84.5016
90.8408
78.9894
50.4937
12101221188316315
99.6835
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.6677
96.0493
95.2892
79.6573
63942636392316202
63.9241
qzeng-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
74.4676
94.6746
61.3692
51.5690
1609502316146
46.2025
rpoplin-dv42SNP*map_sirenhet
99.5263
99.4010
99.6518
54.9841
9044654590433316159
50.3165
raldana-dualsentieonINDELI6_15HG002compoundhethomalt
16.3588
100.0000
8.9080
58.9623
31031317315
99.3691
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.6969
92.8325
94.5775
63.9536
56474365529317301
94.9527
ckim-gatkSNP*map_l125_m0_e0*
76.5382
63.0075
97.4697
89.2235
1221471711221131731
9.7792
ghariani-varprowlSNPtimap_l150_m0_e0*
96.8336
97.6466
96.0340
83.6908
7676185767631783
26.1830
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.2065
34.2838
75.7645
57.3941
1022195999131753
16.7192
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
astatham-gatkINDELI1_5HG002compoundhet*
96.1407
94.9417
97.3704
66.4075
1173162511738317315
99.3691
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3731
99.4054
99.3408
76.0979
4798428747771317259
81.7035
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.0424
98.7834
99.3028
71.2490
4514655645149317104
32.8076
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.0424
98.7834
99.3028
71.2490
4514655645149317104
32.8076
qzeng-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
87.8478
91.5179
84.4608
66.3644
16401521723317119
37.5394
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
65.2028
60.0760
71.2862
53.7688
790525787317306
96.5300
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.7491
96.2553
89.4894
50.3947
26991052699317129
40.6940
gduggal-bwaplatSNP*map_l100_m2_e1*
82.9577
71.1789
99.4078
82.2985
53197215405320931787
27.4448
jlack-gatkSNP*map_l250_m0_e0het
89.1456
97.3440
82.2210
96.2201
146640146631723
7.2555
anovak-vgINDEL*map_l125_m2_e1homalt
76.3517
86.5633
68.2951
84.5478
670104685318292
91.8239
anovak-vgINDELI16_PLUS*het
20.3076
12.3988
56.0773
46.0104
337238140631857
17.9245
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
57.4030
44.5498
80.6804
63.6484
141017551328318230
72.3270
gduggal-snapfbSNPti*hetalt
78.4605
99.8282
64.6274
61.2500
581158131823
7.2327
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
40.3265
76.3636
27.3973
91.1318
1263912031810
3.1447
eyeh-varpipeSNPtimap_l125_m2_e0het
98.9240
99.5550
98.3009
76.7289
18792841839831815
4.7170
gduggal-bwafbSNPtvHG002compoundhet*
97.8192
99.1259
96.5465
53.1590
884578889031886
27.0440
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3646
97.7617
98.9750
61.5381
3070570330705318294
92.4528
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3646
97.7617
98.9750
61.5381
3070570330705318294
92.4528
qzeng-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
94.1056
96.6465
91.6950
53.7560
35161223511318204
64.1509
mlin-fermikitINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
95.8406
96.8379
94.8635
56.7607
58801925873318299
94.0252
qzeng-customSNP*HG002compoundhethet
97.8777
97.6372
98.1193
49.7459
138433351659131873
22.9560
qzeng-customSNPtvmap_l125_m1_e0*
84.7104
74.9376
97.4144
82.6672
12002401411981318271
85.2201
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
73.9992
84.8853
65.5879
54.1770
629112608319304
95.2978