PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
79751-79800 / 86044 show all
qzeng-customSNPtvmap_l100_m1_e0het
88.3933
80.7745
97.5991
81.8251
12453296412439306244
79.7386
qzeng-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
38.1346
97.7011
23.6908
69.1538
852953062
0.6536
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.9611
84.4804
91.7409
50.5473
37566903399306289
94.4444
asubramanian-gatkINDEL*HG002complexvarhet
98.7623
98.2061
99.3248
58.2604
453838294501430659
19.2810
bgallagher-sentieonSNPtimap_l100_m2_e0*
99.4612
99.5466
99.3760
66.3096
487392224873230650
16.3399
ltrigg-rtg1INDELI1_5**
99.3139
98.8385
99.7940
55.2555
1489131750148225306127
41.5033
ckim-gatkINDELI1_5HG002compoundhet*
94.8213
92.3843
97.3904
66.1548
1141594111420306304
99.3464
ciseli-customINDEL*map_l150_m2_e0*
65.2883
59.0199
73.0465
93.1719
831577832307191
62.2150
bgallagher-sentieonSNPtimap_l100_m2_e1*
99.4649
99.5494
99.3806
66.3075
492622234925530750
16.2866
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200*
83.2354
82.2465
84.2483
57.4547
17283731642307301
98.0456
mlin-fermikitSNPtimap_l250_m2_e1*
48.6646
34.1017
84.9362
80.0607
173133451731307262
85.3420
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.6321
89.4447
85.8915
75.4124
16271921869307263
85.6678
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.6321
89.4447
85.8915
75.4124
16271921869307263
85.6678
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
79.5706
70.3775
91.5264
68.8371
33001389331630718
5.8632
gduggal-snapfbSNPtvmap_l125_m0_e0het
94.9693
96.7280
93.2734
75.1430
42571444257307123
40.0651
ghariani-varprowlSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
85.1516
96.8750
75.9593
78.6419
961319703073
0.9772
rpoplin-dv42INDELD1_5HG002compoundhethet
90.2551
96.8171
84.5262
76.1853
1673551677307300
97.7199
gduggal-bwavardSNPtilowcmp_SimpleRepeat_quadTR_11to50*
97.5597
97.9780
97.1450
52.3866
105152171044630767
21.8241
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
40.0511
70.7317
27.9343
65.1961
11648119307306
99.6743
jmaeng-gatkINDELI1_5HG002compoundhet*
94.6029
91.9877
97.3711
66.5483
1136699011371307304
99.0228
jmaeng-gatkINDELI6_15*homalt
97.4945
99.7916
95.3008
55.3726
6226136226307303
98.6971
jlack-gatkSNPtiHG002complexvar*
99.9170
99.8944
99.9396
17.8349
507899537507834307122
39.7394
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.3560
99.6428
97.1020
45.5337
103203710320308303
98.3766
qzeng-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.4591
98.7277
98.1920
68.0700
34924516727308247
80.1948
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
85.5820
98.8433
75.4582
85.6686
94011947308190
61.6883
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
49.6345
46.9154
52.6882
51.2725
327370343308167
54.2208
jmaeng-gatkSNPtimap_l150_m2_e0het
85.2876
76.1276
96.9535
90.1394
98063075980230833
10.7143
jmaeng-gatkSNPtimap_l150_m2_e0*
81.1449
69.3009
97.8719
88.3988
1421562971421130934
11.0032
ltrigg-rtg1INDEL*HG002complexvar*
98.8636
98.1465
99.5912
55.0476
75511142675278309190
61.4887
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
24.4217
20.7792
29.6128
67.8388
128488130309308
99.6764
jpowers-varprowlINDELD1_5HG002complexvarhomalt
96.2485
95.4897
97.0194
51.0621
1012047810058309250
80.9061
raldana-dualsentieonSNPtimap_l100_m1_e0het
99.0505
99.1317
98.9695
65.9806
29682260296753096
1.9418
anovak-vgINDEL*map_l125_m2_e0homalt
76.4959
86.5007
68.5656
84.5197
660103674309283
91.5858
jlack-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
89.2273
86.8923
91.6913
54.4965
34145153410309298
96.4401
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
78.5748
67.1057
94.7725
26.6989
18348995602309300
97.0874
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
38.9269
92.7273
24.6341
91.7522
102810130913
4.2071
gduggal-snapvardINDELD1_5map_l125_m2_e0*
88.0937
95.6255
81.6617
88.2856
1093501376309102
33.0097
gduggal-bwavardINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
71.6652
92.4180
58.5235
76.3191
45137436309284
91.9094
eyeh-varpipeSNPtimap_l125_m1_e0*
99.2923
99.6523
98.9350
73.2001
292331022870430921
6.7961
gduggal-bwaplatSNP*map_l100_m2_e0het
86.5211
76.7517
99.1404
84.8771
35612107873563630982
26.5372
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
62.2829
56.8163
68.9135
42.3099
671510685309288
93.2039
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.1562
93.5723
94.7476
64.3692
56923915574309293
94.8220
dgrover-gatkSNP*map_l125_m2_e0*
99.3279
99.3194
99.3363
74.2156
464053184639931069
22.2581
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2241
98.9337
99.5161
74.5848
6374468763757310273
88.0645
jpowers-varprowlINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
48.9503
37.9479
68.9379
70.3682
6991143688310289
93.2258
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.1610
92.6630
77.0880
87.8937
1023811043310101
32.5806
ckim-dragenSNPtimap_l125_m0_e0het
97.4340
98.5598
96.3335
79.4732
8144119814531027
8.7097
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5155
98.1227
98.9115
70.9579
281735392816931055
17.7419
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5155
98.1227
98.9115
70.9579
281735392816931055
17.7419
qzeng-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
86.4441
98.6928
76.9001
45.2692
15121032310290
93.5484