PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
79701-79750 / 86044 show all
gduggal-bwafbSNPtimap_l125_m2_e1*
98.9476
98.8812
99.0140
74.0560
302273423022730185
28.2392
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
83.3458
88.4259
78.8177
87.4581
1146150112030176
25.2492
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200het
34.6127
23.8776
62.8853
50.2149
11737351030147
15.6146
anovak-vgINDEL*map_l125_m1_e0homalt
76.2677
86.4754
68.2154
83.1764
63399646301277
92.0266
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6409
98.1777
97.1099
61.1163
991318410114301207
68.7708
ghariani-varprowlINDEL*segdup*
89.4068
90.3756
88.4586
97.2748
23102462307301223
74.0864
hfeng-pmm2SNP*map_l125_m2_e1het
99.1256
99.2645
98.9871
75.5812
294222182941630125
8.3057
dgrover-gatkINDELI1_5HG002compoundhet*
96.3058
95.1360
97.5048
66.8717
1175560111762301300
99.6678
ckim-isaacINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
75.8613
83.4547
69.5344
53.8102
802159687301288
95.6811
astatham-gatkSNPti*het
99.3889
98.8086
99.9762
18.5890
126661815273126656330260
19.8675
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
25.9640
21.0884
33.7719
34.7639
155580154302292
96.6887
gduggal-bwaplatSNP*map_l100_m1_e0*
82.4562
70.4418
99.4115
81.1732
51002214015101430283
27.4834
gduggal-bwafbINDELD1_5HG002complexvar*
98.0343
97.0289
99.0607
56.8977
3174397231851302219
72.5166
jmaeng-gatkSNPtimap_l100_m0_e0*
83.3904
72.5047
98.1224
83.1489
1578559861578230237
12.2517
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
85.3269
91.2425
80.1316
82.4013
121911712183025
1.6556
gduggal-snapvardINDELD1_5map_l125_m2_e0het
85.7414
98.1675
76.1076
89.6257
7501496230295
31.4570
qzeng-customINDELD6_15HG002complexvarhet
94.9295
96.7628
93.1643
54.7892
30191014116302103
34.1060
mlin-fermikitSNPtimap_l250_m2_e0*
48.4805
33.9257
84.9075
79.7858
169933091699302258
85.4305
qzeng-customINDELD1_5HG002complexvar*
98.5796
98.0926
99.0713
54.7462
3209162432325303168
55.4455
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
87.5740
97.1061
79.7460
45.0808
30291193303283
93.3993
gduggal-bwavardSNPtilowcmp_SimpleRepeat_quadTR_11to50het
96.8600
98.1613
95.5927
59.3604
6620124657230363
20.7921
eyeh-varpipeINDELI6_15HG002complexvarhet
83.9009
81.8684
86.0369
46.7354
19284271867303298
98.3498
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6849
97.2767
98.0965
60.4473
1561043715615303282
93.0693
ckim-vqsrINDELI1_5HG002compoundhet*
94.7676
92.2629
97.4120
66.1892
1140095611405303301
99.3399
jpowers-varprowlSNPtimap_l125_m0_e0*
96.7602
95.9489
97.5853
79.1496
1224551712245303110
36.3036
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.1412
97.5428
98.7469
41.4519
2393760323956304264
86.8421
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.9013
96.7415
99.0893
45.1717
1211340833076304254
83.5526
asubramanian-gatkINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
66.6667
0.0000
75.5627
2103040
0.0000
asubramanian-gatkINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.0000
76.4158
0103040
0.0000
asubramanian-gatkINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
76.4158
0103040
0.0000
anovak-vgINDELD16_PLUS*homalt
77.8556
75.0591
80.8685
58.6629
12704221285304214
70.3947
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7280
96.4818
99.0068
57.7386
30303110530303304291
95.7237
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7280
96.4818
99.0068
57.7386
30303110530303304291
95.7237
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.3579
96.3517
96.3641
60.0124
80553058057304143
47.0395
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.3579
96.3517
96.3641
60.0124
80553058057304143
47.0395
dgrover-gatkSNP*map_l125_m1_e0*
99.3215
99.3139
99.3291
72.7346
450163114501030468
22.3684
gduggal-snapvardINDELD1_5map_l125_m1_e0*
87.8220
95.5882
81.2230
87.7784
104048131530498
32.2368
gduggal-snapvardINDELD1_5map_l125_m2_e1het
85.7424
98.1818
76.1006
89.7593
7561496830495
31.2500
gduggal-snapplatINDELD1_5map_siren*
85.8913
80.9294
91.5013
89.0859
2856673327330456
18.4211
ghariani-varprowlINDELD1_5map_sirenhet
93.3499
99.2534
88.1092
86.6204
2260172260305111
36.3934
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
59.8233
47.0725
82.0483
56.7574
101311391394305138
45.2459
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
36.9757
51.3011
28.9044
74.0000
13813112430517
5.5738
asubramanian-gatkINDELD1_5*het
99.3754
99.1025
99.6499
59.9427
8678878686804305126
41.3115
anovak-vgSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.3819
93.7500
91.0531
69.7462
30452033104305131
42.9508
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
82.6406
75.4390
91.3622
46.4432
29649653226305294
96.3934
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.7116
95.4096
98.0496
64.9238
1533973815333305176
57.7049
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.7116
95.4096
98.0496
64.9238
1533973815333305176
57.7049
ciseli-customINDELD16_PLUS*het
73.2078
63.1529
87.0708
54.9379
199511642054305262
85.9016
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.8135
98.9459
94.7711
71.2462
5538595528305297
97.3770
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0978
99.2811
98.9152
61.5160
277582012790230667
21.8954