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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
79601-79650 / 86044 show all
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
78.9511
85.2645
73.5081
83.3082
677117813293133
45.3925
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.5793
94.7690
92.4191
52.4483
35691973572293241
82.2526
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.5793
94.7690
92.4191
52.4483
35691973572293241
82.2526
qzeng-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
62.0163
89.6774
47.3968
67.2160
1391626429316
5.4608
hfeng-pmm2SNPtimap_siren*
99.6860
99.6642
99.7079
54.6933
10001833710000329339
13.3106
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.2043
97.0166
97.3928
54.4393
1095933710945293257
87.7133
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
87.7527
90.7596
84.9385
91.1277
1601163165829416
5.4422
jmaeng-gatkSNPtimap_l150_m1_e0het
84.7465
75.2789
96.9381
89.5763
93123058930829433
11.2245
ciseli-customINDELD1_5map_sirenhet
83.5161
80.9398
86.2617
86.1336
1843434184629466
22.4490
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.1124
96.0968
84.8297
79.1299
1748711644294276
93.8776
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.1124
96.0968
84.8297
79.1299
1748711644294276
93.8776
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.0858
99.4585
92.9344
71.8889
385721386729419
6.4626
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
21.6154
16.4179
31.6279
50.5178
88448136294156
53.0612
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
34.8996
38.9262
31.6279
50.4608
5891136294156
53.0612
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
78.6812
70.0218
89.7846
52.4533
256710992584294213
72.4490
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50het
95.3000
98.0590
92.6920
44.9432
3587713729294269
91.4966
qzeng-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
83.2079
85.6274
80.9215
46.7151
11261891247294107
36.3946
qzeng-customSNPtvmap_l100_m0_e0*
84.6327
75.3158
96.5801
84.0828
834827368331295249
84.4068
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.3381
99.4715
97.2303
50.5019
103525510356295278
94.2373
raldana-dualsentieonINDELD1_5HG002compoundhet*
94.6881
92.0801
97.4481
64.3836
1126696911265295292
98.9831
ciseli-customSNPtvmap_l125_m0_e0homalt
85.0153
83.7461
86.3236
70.9690
18603611862295238
80.6780
ckim-gatkSNPtimap_l150_m2_e1*
81.3077
69.4784
97.9917
88.2788
1439863251439429535
11.8644
ckim-dragenINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9422
97.7317
98.1536
61.1398
1568336415682295284
96.2712
jmaeng-gatkSNPtimap_l150_m1_e0*
80.4694
68.3289
97.8561
87.7017
1346962431346529534
11.5254
jpowers-varprowlSNPtimap_l125_m0_e0het
95.7486
95.1228
96.3826
81.5656
78604037860295104
35.2542
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.6516
99.8513
97.4804
41.9937
1141617114132952
0.6780
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
31.8050
60.7407
21.5426
49.5302
825381295292
98.9831
gduggal-snapvardSNPtiHG002complexvarhomalt
98.1979
96.6107
99.8382
17.7966
1869076557182591296181
61.1486
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
64.3216
84.4327
51.9481
54.2348
32059320296261
88.1757
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
82.6900
88.2003
77.8277
75.2503
1039139103929697
32.7703
gduggal-snapplatINDEL*map_l100_m2_e1het
79.3653
73.4102
86.3720
92.6210
1720623187629632
10.8108
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
57.9068
46.9489
75.5372
67.0120
854965914296261
88.1757
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
57.9068
46.9489
75.5372
67.0120
854965914296261
88.1757
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.6015
99.7463
97.4826
44.5639
1140429114622969
3.0405
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0130
99.6869
98.3480
64.2091
17513551762229623
7.7703
ckim-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5960
99.7232
99.4692
61.2535
554771545546629629
9.7973
rpoplin-dv42INDELD16_PLUS*het
94.0655
97.4042
90.9480
71.1818
3077822974296276
93.2432
dgrover-gatkINDELD1_5HG002compoundhet*
96.6517
95.7826
97.5368
66.6083
1171951611721296293
98.9865
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.1687
84.9804
96.0316
53.5294
714612637163296207
69.9324
mlin-fermikitINDEL*map_sirenhomalt
84.6161
81.5066
87.9724
79.3852
21644912165296264
89.1892
anovak-vgINDELD1_5map_l100_m2_e1het
83.2523
87.6183
79.3007
85.1706
1111157113429694
31.7568
anovak-vgSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
96.7152
97.3162
96.1216
41.6514
72522007336296141
47.6351
bgallagher-sentieonINDEL*HG002complexvar*
99.4954
99.3774
99.6137
58.2041
7645947976328296257
86.8243
anovak-vgINDELC1_5**
51.8752
80.0000
38.3817
91.6130
8218529725
8.4175
astatham-gatkINDELD1_5HG002compoundhet*
96.5582
95.6110
97.5244
66.3015
1169853711700297294
98.9899
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.1348
99.8900
98.3909
39.6771
1816320181602974
1.3468
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
15.8746
12.3386
22.2513
50.7732
8661185297292
98.3165
gduggal-snapvardINDELD1_5HG002complexvarhomalt
91.8287
87.2523
96.9117
42.9901
924713519320297279
93.9394
gduggal-snapfbINDELI6_15*hetalt
66.8619
57.6892
79.5031
50.4107
493336181152297287
96.6330
ghariani-varprowlINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
74.8352
86.7069
65.8228
74.0520
57488572297264
88.8889