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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
79351-79400 / 86044 show all
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.5045
85.7025
98.1490
78.6703
14548242714582275104
37.8182
gduggal-snapvardINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
56.8750
100.0000
39.7380
88.6830
1018227665
23.5507
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.0878
99.0624
99.1133
72.7315
308512923085127626
9.4203
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.0878
99.0624
99.1133
72.7315
308512923085127626
9.4203
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0559
96.7947
99.3503
55.8922
41946138942206276166
60.1449
hfeng-pmm3SNPtv**
99.9443
99.9171
99.9715
21.1004
96888680496880427631
11.2319
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
89.5692
87.1711
92.1030
51.3163
32144733219276266
96.3768
mlin-fermikitINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.4923
90.0065
83.2423
70.9011
13871541371276273
98.9130
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
87.3389
97.3404
79.2012
38.5364
18351051276265
96.0145
qzeng-customSNPtvmap_l125_m1_e0het
85.2256
76.2789
96.5500
86.2555
772424027724276229
82.9710
gduggal-bwafbSNPtimap_l125_m1_e0het
98.5889
98.6861
98.4920
74.2606
180262401802627677
27.8986
gduggal-bwafbSNPtilowcmp_SimpleRepeat_diTR_11to50*
96.0758
97.7052
94.4998
74.6425
4726111474227680
28.9855
egarrison-hhgaINDELD16_PLUSHG002compoundhet*
61.7860
49.7651
81.4641
41.2623
116511761213276256
92.7536
ckim-dragenSNPtvmap_l150_m2_e0*
98.2503
98.9080
97.6013
79.0121
112311241123027627
9.7826
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.2063
99.6651
96.7896
65.1548
8332288321276275
99.6377
raldana-dualsentieonSNPtimap_l125_m2_e1het
98.7395
98.9207
98.5590
73.8046
18881206188772763
1.0870
rpoplin-dv42SNP*map_l100_m1_e0het
99.2638
99.1402
99.3876
64.2170
4496939044957277141
50.9025
ndellapenna-hhgaINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
82.5216
75.5967
90.8430
68.5420
26928692748277196
70.7581
qzeng-customINDELC16_PLUS*het
0.0000
0.0000
1.7730
70.9278
0052770
0.0000
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0742
98.7301
99.4207
71.8442
476586134754027783
29.9639
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.1966
96.0492
98.3718
68.1010
1711570416736277229
82.6715
ckim-gatkSNPtimap_l150_m1_e0*
80.5127
68.3289
97.9843
87.5524
1346962431346527734
12.2744
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_51to200het
58.1410
81.6327
45.1485
57.8816
40090228277270
97.4729
eyeh-varpipeSNPtvHG002compoundhethet
92.5346
98.5876
87.1819
61.1401
460766188427744
15.8845
gduggal-bwafbSNPtvHG002compoundhethet
96.4922
98.6946
94.3859
59.0165
461261465727752
18.7726
eyeh-varpipeINDELI6_15HG002complexvarhomalt
78.9714
80.2306
77.7510
38.7303
974240968277275
99.2780
ckim-vqsrSNP*map_l125_m1_e0*
69.8181
53.9590
98.8800
88.0425
2445820869244552775
1.8051
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0288
97.3348
98.7327
54.0492
2165759321658278267
96.0432
rpoplin-dv42SNP*map_l100_m2_e0het
99.2759
99.1530
99.3992
65.9847
4600639345994278141
50.7194
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
81.0483
98.1785
69.0078
78.8892
53910619278189
67.9856
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
71.8992
96.8668
57.1649
88.9701
3711237127823
8.2734
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.5115
98.1663
98.8593
41.0712
2409045024092278270
97.1223
anovak-vgINDEL*map_l125_m0_e0*
71.3287
72.2222
70.4570
90.6359
637245663278156
56.1151
qzeng-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
94.4318
96.0944
92.8258
50.7186
3543144359727863
22.6619
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
77.9097
64.7065
97.8826
70.2472
1285270101285127898
35.2518
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
86.1916
81.4378
91.5347
58.1069
29006613006278275
98.9209
hfeng-pmm1SNPtv**
99.9383
99.9053
99.9713
20.8629
96877291896869127843
15.4676
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.4677
98.0807
98.8578
41.0102
2406947124060278268
96.4029
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.9231
98.9002
80.7746
59.1871
1169131168278276
99.2806
ckim-gatkINDEL*HG002complexvar*
99.3276
99.0226
99.6345
58.1713
7618675276048279226
81.0036
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
42.0233
85.0394
27.9070
48.4000
10819108279270
96.7742
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.1543
99.2037
99.1050
72.6597
308952483089527924
8.6022
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.1543
99.2037
99.1050
72.6597
308952483089527924
8.6022
ckim-vqsrINDELI6_15*homalt
97.7408
99.8557
95.7136
54.8957
623096230279277
99.2832
ghariani-varprowlINDEL*segduphet
90.4926
98.3629
83.7885
96.1254
1442241442279206
73.8351
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
21.8945
17.7898
28.4615
75.2538
1326101112793
1.0753
jlack-gatkINDEL*map_l100_m2_e0*
95.3427
97.9691
92.8535
88.3944
361875362527928
10.0358